View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-tnk48-1 (Length: 673)
Name: R108-tnk48-1
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk48-1 |
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Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 104 - 588
Target Start/End: Original strand, 25116309 - 25116779
Alignment:
| Q |
104 |
ataagaaaggtgatcgcgacctcattgtcgaacatcctgatccagaaattgacaaaggttcgatgagtgcaaatgagaagcgtgacgnnnnnnnggagtg |
203 |
Q |
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| T |
25116309 |
ataagaaaggtaatcgcgacctcattgtcgaacatcctgatccagaaattgacaaaggttcgatgagtgcaaatgagaagcgtgacgaaaaaaaggagtg |
25116408 |
T |
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| Q |
204 |
tcatacaggtgaaggttacatgattattatagtgaactcatttaagtacgatttgtttattactttaaaacatggccatttccagttatgtccgaagtga |
303 |
Q |
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| T |
25116409 |
tcatacaggtgaaggttacatgatcattatagtgaactcatttacgttcgatttgtttattactttaaaatatttc-attttcagttatgtcg--agtga |
25116505 |
T |
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| Q |
304 |
aagccgtttttcttaccctgaacaaaggtcccagaagagggttaggaatactcgaaggatttacccaaaaatttgagaaggtcccctacatagctacaga |
403 |
Q |
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| T |
25116506 |
ag--cgtttt-cttacc-tgaacaaag-tcacaga-gagg-ttaggaatactcga-ggatta--ccaaaaatttgagaagt--ccctacatagctacaga |
25116593 |
T |
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| Q |
404 |
atgggaacaattacaagagaagaactacaaacaatggtaatgttgtttatacatccaaattttcagaagttacatttttggattttctgtcacatcctat |
503 |
Q |
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| T |
25116594 |
atgggaacaattacaagagaagaactacaaaaaatggtaatattgtttatacatccaaattttcagaagttacattttttgattttctgtcacatcctat |
25116693 |
T |
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| Q |
504 |
aactcttgaattgaatatggcttgcattgaacattaaactttaatacaaaaattatgtt-aaaatactgaaacggagaagaattca |
588 |
Q |
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| T |
25116694 |
aactcttgaattgaatatggcttgcattgaacattaaactttaatacaaaaattatgttaaaaatactgtaacggagaagaattca |
25116779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 25116179 - 25116283
Alignment:
| Q |
1 |
ctgagtaccgagaaggccaacgatttgcaaggtgatcatgatctcattgccaaaaatcttgatccagaatttaacaaaggtttgataagtgcagaggtgt |
100 |
Q |
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| T |
25116179 |
ctgagtaccgagaaggccaaagatttgcaaggtgatcatgatctcattgccaaaaatcttgatccagaatttaacaaaggtttgatgagtgcagaggtgt |
25116278 |
T |
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| Q |
101 |
ctgat |
105 |
Q |
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| T |
25116279 |
ctgat |
25116283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 596 - 673
Target Start/End: Original strand, 25116106 - 25116183
Alignment:
| Q |
596 |
tgataatggtgtttgaatttcttgaaattgataatcttttaaatgccttttcattaggaatttgtttgtcggactgag |
673 |
Q |
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| T |
25116106 |
tgataatggtgtttgaatttcttgaaattgataatcttttaaatgctttttcattaggaatttgtttgtcgaactgag |
25116183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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