View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: R108-tnk48-10 (Length: 1622)
Name: R108-tnk48-10
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk48-10 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
| [»] scaffold0188 (8 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 1456; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 1456; E-Value: 0
Query Start/End: Original strand, 76 - 1622
Target Start/End: Complemental strand, 50981782 - 50980242
Alignment:
| Q |
76 |
tcaattgctagttttttattaccactagctttagttttgaatttagtgtcggtgtgtaatggaggcacaaccagtgcttttgttaggaatgttcagaaag |
175 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50981782 |
tcaattgctagttttttattaccactagctttagttttgaatttagtgtctgtgtgtaatggaggcacaaccagtgcttttgttaggaatgttcagaaag |
50981683 |
T |
|
| Q |
176 |
gcgttaatatgtcacttgatagtgatgtttttgctgttccttctggttataatgctccccaacaggttcatattacacaaggtgatcttgttgggaaaga |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50981682 |
gcgttaatatgtcacttgatagtgatgtttttgctgttccttctggttataatgctccccaacaggttcatattacacaaggtgatcttgttgggaaaga |
50981583 |
T |
|
| Q |
276 |
agtgatcgtatcgtgggtgaccgaggatgaaccagggtcgatcgcagtgcgctactggagtactgacaacagcaaacaaaagaagatagctaaagggaaa |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
50981582 |
agtgatcgtatcgtgggtgaccgaggatgaaccagggtcgatcgcagtgcgctactggagtactgacaacagcaaacaaaagaagctagctaaagggaaa |
50981483 |
T |
|
| Q |
376 |
attggtacctatagattcttcaattactcatctgggtttattcatcaccacctactataaggaatttggagtacaacactaaatattattatgaggttgg |
475 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50981482 |
attgttacttatagattcttcaattactcatctggttttattcatcaca--ctactataaggaatttggagtacaacactaaatattattatgaggttgg |
50981385 |
T |
|
| Q |
476 |
acttgggaaccaccaacaagacagttttggtttataactcctcctgaaattggtcctgatgtgccatacacatttggtctcataggagatctcggtcaga |
575 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50981384 |
acttgggaaca--caacaagacagttttggtttataactcctcctgaaattggtcctgatgtgccatacacatttggtctcataggagatctcggtcaga |
50981287 |
T |
|
| Q |
576 |
gctttgattcaaacagaacactttctcactatgaattgaatcctagaaaggggcaaacagtgttgtttgttggagatctctcttattcagataactttcc |
675 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50981286 |
gctttgattcaaacagaacactttctcactatgaattgaatcctagaaaggggcaaacagtgttgtttgttggagatctctcttattcagataactttcc |
50981187 |
T |
|
| Q |
676 |
aaatcatgacaatgttaggtgggatacttggggaaggtttgtagaaaggagcacggcttatcagccgtggatatggactgtaggaaaccatgaaattgat |
775 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50981186 |
aaatcatgacaatgttaggtgggatacttggggaaggtttgtagaaaggagcacggcttatcagccgtggatatggactgtaggaaaccatgaaattgat |
50981087 |
T |
|
| Q |
776 |
tttgccccagaaattggcgaaaccaaaccattcaaaccttattcgcaccgataccacactccttataaagcatcacaaagtacttcacccttttggtatt |
875 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50981086 |
tttgccccagaaattggcgaaaccaaaccattcaaaccttattcgcaccgataccacactccttataaagcatcacaaagtacttcacccttttggtatt |
50980987 |
T |
|
| Q |
876 |
ctatcagaagagcttcagctcacatcattgtcttggcctcgtattcagcatatggaaaatatacaccacagtaccaatggcttgaacaagagctacctaa |
975 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50980986 |
ctatcagaagagcttcagctcacatcattgtcttggcctcgtattcaggatatggaaaatatacaccacagtaccaatggcttgaacaagagctacctaa |
50980887 |
T |
|
| Q |
976 |
agttaacaggacagaaactccttggttgattgttctaatgcattcaccttggtataatagcaacaatcaacattatatggaaggggagacaatgagagta |
1075 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50980886 |
agttaacaggacagaaactccttggttgattgttctaatgcattcaccttggtataatagcaacaatcaacattatatggaaggggagacaatgagagta |
50980787 |
T |
|
| Q |
1076 |
atgtatgagccatggtttgttaagtacaaggttgatgttgtgtatgctggacatgtgcatgcctatgaaagaaccgaacgtgtgtcgaatattgcatata |
1175 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50980786 |
atgtatgagccatggtttgttaagtacaaggttgatgttgtgtatgctggacatgtgcatgcctatgaaagaaccgaacgtgtgtcgaatattgcatata |
50980687 |
T |
|
| Q |
1176 |
atgttgtgaatggtatttgcactcctataaaagatcaatcagctcctgtatacatacccattggagatggagggacccttggaggcatggaaaccaacat |
1275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
50980686 |
atgttgtgaatggtatttgcactcctataaaagatcaatcagctcctgtatacataaccattggagatggagggaaccttggaggcatggaaaccaacat |
50980587 |
T |
|
| Q |
1276 |
gacagaaccacagccagagtactcagcattcagagaggctagctttggacatgccattttcgacataaagaacagaacacatgctcactatagctggcac |
1375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50980586 |
gacagaaccacagccagagtactcagcattcagagaggctagctttggacatgccattttcgacataaagaacagaacacatgctcactatagctggcac |
50980487 |
T |
|
| Q |
1376 |
agaaatcaagatggttattcggttgaggctgattcccattggtttttcaacagattttggcaaccagttgatgattccaccgctcatgttttccattgat |
1475 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50980486 |
agaaatcaagatggttattcggttgaggctgattcccattggtttttcaacagattttggcatccagttgatgattccaccgctcatgttttccattgat |
50980387 |
T |
|
| Q |
1476 |
acattgatttactgctcttttcacaagaatactcaatgtgatgttaatcaataaagncatgattatgtaataattgcttgtagggtcaatcaattatgat |
1575 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
50980386 |
acattgatttactgctcttttcacaagaatactcaatgtgatgttaatcaataaagtcatgattatgtaataattgcttgta-ggtcaatcaattatgat |
50980288 |
T |
|
| Q |
1576 |
tatcattacacttncgtnctactttgtatgactgttaaatagatgta |
1622 |
Q |
| |
|
||||||||| ||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
50980287 |
tatcattac-ctttcgttctactttgtatgactgttaaatagatgta |
50980242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 142; E-Value: 9e-74
Query Start/End: Original strand, 1260 - 1488
Target Start/End: Complemental strand, 50965152 - 50964923
Alignment:
| Q |
1260 |
gcatggaaaccaacatgacagaaccacagccagagtac-tcagcattcagagaggctagctttggacatgccattttcgacataaagaacagaacacatg |
1358 |
Q |
| |
|
|||| |||||||||||| ||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50965152 |
gcatagaaaccaacatgtcagaaccacaggcagagtacattagcattcagagaggctagctttggacatgccattttcgacataaagaacagaacacatg |
50965053 |
T |
|
| Q |
1359 |
ctcactatagctggcacagaaatcaagatggttattcggttgaggctgattcccattggtttttcaacagattttggcaaccagttgatgattccaccgc |
1458 |
Q |
| |
|
||||||||| || |||||||||||| |||||||||| | ||||| ||||||| |||||||||| |||||||||||||| ||||||||||||||||| | |
|
|
| T |
50965052 |
ctcactataactatcacagaaatcaaaatggttattctgatgaggttgattccaattggttttttaacagattttggcacccagttgatgattccacatc |
50964953 |
T |
|
| Q |
1459 |
tcatgttttccattgatacattgatttact |
1488 |
Q |
| |
|
|||||||| || || | ||||||||||||| |
|
|
| T |
50964952 |
tcatgtttccctttaacacattgatttact |
50964923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 2e-34
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 50980246 - 50980164
Alignment:
| Q |
1 |
atgtaaaggagcaagcatcttgttttatgtgtaaaaataaatattacaaaactttaacaagncttctcagctagctcaattgc |
83 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
50980246 |
atgtaaaggagcaagcatcttgttttatgtgtaaaaataaatattacaaaactttaacaagacttctcagctagatcaattgc |
50980164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 70; E-Value: 8e-31
Query Start/End: Original strand, 87 - 296
Target Start/End: Complemental strand, 50965587 - 50965377
Alignment:
| Q |
87 |
ttttttattaccacta---gctttagttttgaatttagtgtcggtgtgtaatggaggcacaaccagtgcttttgttaggaatgttcagaaaggcgttaat |
183 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||| |||| ||||| |||||||| | ||| ||| |||||||||| || || | || ||||||||| |
|
|
| T |
50965587 |
ttttttattaccactactagctttggttttgaatttggtgtttgtgtgcaatggagggataactagtacttttgttagaaaagtcgaaaagggcgttaat |
50965488 |
T |
|
| Q |
184 |
atgtcacttgatagtgatgtttttgctgttcc-ttctggttataatgctccccaacaggttcatattacacaaggtgatcttgttgggaaagaagtgatc |
282 |
Q |
| |
|
||||| |||||||| ||||| ||| |||||| |||||||||||| ||||||| | |||||||||| || |||||||||||||||||||| |||||| |
|
|
| T |
50965487 |
atgtctcttgatagcgatgtgtttattgttccattctggttataaggctccccgataggttcatataac---aggtgatcttgttgggaaagccgtgatc |
50965391 |
T |
|
| Q |
283 |
gtatcgtgggtgac |
296 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
50965390 |
gtatcgtgtgtgac |
50965377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 156; Significance: 4e-82; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 4e-82
Query Start/End: Original strand, 929 - 1144
Target Start/End: Original strand, 13640233 - 13640448
Alignment:
| Q |
929 |
ggaaaatatacaccacagtaccaatggcttgaacaagagctacctaaagttaacaggacagaaactccttggttgattgttctaatgcattcaccttggt |
1028 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
13640233 |
ggaaaatatacaccacaatacaaatggcttgaacaggagctaccaaaagttaacaggacagaaactccttggttgattgttctcatgcattcaccttggt |
13640332 |
T |
|
| Q |
1029 |
ataatagcaacaatcaacattatatggaaggggagacaatgagagtaatgtatgagccatggtttgttaagtacaaggttgatgttgtgtatgctggaca |
1128 |
Q |
| |
|
|||||||| ||||| | ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
|
|
| T |
13640333 |
ataatagctacaattatcattacatggaaggggaatcaatgagagtaatgtatgagccatggtttgttaagtacaaggttgatgtcgtgtatgctggcca |
13640432 |
T |
|
| Q |
1129 |
tgtgcatgcctatgaa |
1144 |
Q |
| |
|
||| || ||||||||| |
|
|
| T |
13640433 |
tgtccacgcctatgaa |
13640448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 1e-72
Query Start/End: Original strand, 1273 - 1472
Target Start/End: Original strand, 13641257 - 13641456
Alignment:
| Q |
1273 |
catgacagaaccacagccagagtactcagcattcagagaggctagctttggacatgccattttcgacataaagaacagaacacatgctcactatagctgg |
1372 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
13641257 |
catgacagaaccacaaccagagtactcagcatacagagaggccagctttggacatgccatttttgacataaagaacagaacacatgctcactacagctgg |
13641356 |
T |
|
| Q |
1373 |
cacagaaatcaagatggttattcggttgaggctgattcccattggtttttcaacagattttggcaaccagttgatgattccaccgctcatgttttccatt |
1472 |
Q |
| |
|
|| || |||||||||||||| || |||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| ||||||||| ||||| |
|
|
| T |
13641357 |
cataggaatcaagatggttactctgttgaggctgattctcattggttcttcaacagattttggcacccagttgatgattccacaactcatgtttcccatt |
13641456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 133; E-Value: 2e-68
Query Start/End: Original strand, 563 - 791
Target Start/End: Original strand, 13638687 - 13638915
Alignment:
| Q |
563 |
gatctcggtcagagctttgattcaaacagaacactttctcactatgaattgaatcctagaaaggggcaaacagtgttgtttgttggagatctctcttatt |
662 |
Q |
| |
|
||||| |||||||||| ||||||||||| |||||||||||||| |||||||| || | ||| || ||||||||||||||||||||||||||||| ||| |
|
|
| T |
13638687 |
gatcttggtcagagctatgattcaaacaagacactttctcactacgaattgaacccaacaaaaggacaaacagtgttgtttgttggagatctctcatatg |
13638786 |
T |
|
| Q |
663 |
cagataactttccaaatcatgacaatgttaggtgggatacttggggaaggtttgtagaaaggagcacggcttatcagccgtggatatggactgtaggaaa |
762 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||| ||||||||||||||||| ||||| |
|
|
| T |
13638787 |
cagataactacccgaatcatgacaatgttaggtgggatacttggggaagatttgcagaaaggagcgttgcttatcaaccgtggatatggactgttggaaa |
13638886 |
T |
|
| Q |
763 |
ccatgaaattgattttgccccagaaattg |
791 |
Q |
| |
|
||||||| |||||||||| |||||||||| |
|
|
| T |
13638887 |
ccatgaacttgattttgctccagaaattg |
13638915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 91; E-Value: 2e-43
Query Start/End: Original strand, 239 - 423
Target Start/End: Original strand, 13637831 - 13638012
Alignment:
| Q |
239 |
aggttcatattacacaaggtgatcttgttgggaaagaagtgatcgtatcgtgggtgaccgaggatgaaccagggtcgatcgcagtgcgctactggagtac |
338 |
Q |
| |
|
|||||||||| ||||||||||||| ||| ||||||| ||||||||||||||||||||| |||||||||||||| |||| ||||||||| |||||||||| |
|
|
| T |
13637831 |
aggttcatataacacaaggtgatcatgtggggaaagcagtgatcgtatcgtgggtgactgaggatgaaccaggctcgaacgcagtgcgttactggagta- |
13637929 |
T |
|
| Q |
339 |
tgacaacagcaaacaaaagaagatagctaaagggaaaattggtacctatagattcttcaattactcatctgggtttattcatcac |
423 |
Q |
| |
|
| |||||||| || |||| | |||||||||||||||||| ||| |||||||| ||||||||| | ||||| ||||| |||||| |
|
|
| T |
13637930 |
--agaacagcaagcagaagaggctagctaaagggaaaattgttacttatagatttttcaattacacttctggttttatccatcac |
13638012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 87; E-Value: 6e-41
Query Start/End: Original strand, 1151 - 1261
Target Start/End: Original strand, 13640665 - 13640775
Alignment:
| Q |
1151 |
gaacgtgtgtcgaatattgcatataatgttgtgaatggtatttgcactcctataaaagatcaatcagctcctgtatacatacccattggagatggaggga |
1250 |
Q |
| |
|
||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
13640665 |
gaacgtgtgtccaatgttgcatataatgttgtaaatggtatttgcactcctataaaagatcaatcagctcctgtatacataaccattggagatggaggga |
13640764 |
T |
|
| Q |
1251 |
cccttggaggc |
1261 |
Q |
| |
|
||||| |||| |
|
|
| T |
13640765 |
accttgaaggc |
13640775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 81; E-Value: 2e-37
Query Start/End: Original strand, 794 - 930
Target Start/End: Original strand, 13639066 - 13639202
Alignment:
| Q |
794 |
gaaaccaaaccattcaaaccttattcgcaccgataccacactccttataaagcatcacaaagtacttcacccttttggtattctatcagaagagcttcag |
893 |
Q |
| |
|
||||| ||||||||||| ||||| ||||||||||||| |||||||| |||||||| |||||||| || ||||||||||||||||||| |||||||||| |
|
|
| T |
13639066 |
gaaacaaaaccattcaagccttactcgcaccgataccgtactccttacaaagcatcgcaaagtacctcgcccttttggtattctatcaagagagcttcag |
13639165 |
T |
|
| Q |
894 |
ctcacatcattgtcttggcctcgtattcagcatatgg |
930 |
Q |
| |
|
||||||||||||| ||||| || |||||||||||||| |
|
|
| T |
13639166 |
ctcacatcattgtgttggcttcatattcagcatatgg |
13639202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 74; E-Value: 3e-33
Query Start/End: Original strand, 109 - 242
Target Start/End: Original strand, 13636559 - 13636692
Alignment:
| Q |
109 |
gttttgaatttagtgtcggtgtgtaatggaggcacaaccagtgcttttgttaggaatgttcagaaaggcgttaatatgtcacttgatagtgatgtttttg |
208 |
Q |
| |
|
||||||||||| |||| |||||||||||||||| ||| ||| ||||||||||||| ||| |||| | || ||||| ||||||||||||||||||||| |
|
|
| T |
13636559 |
gttttgaatttggtgtttgtgtgtaatggaggcagaactagtacttttgttaggaaagttgagaagaccattgatatgccacttgatagtgatgtttttg |
13636658 |
T |
|
| Q |
209 |
ctgttccttctggttataatgctccccaacaggt |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
13636659 |
atgttccttctggttataatgctccccaacaggt |
13636692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 70; E-Value: 8e-31
Query Start/End: Original strand, 445 - 561
Target Start/End: Original strand, 13638142 - 13638256
Alignment:
| Q |
445 |
agtacaacactaaatattattatgaggttggacttgggaaccaccaacaagacagttttggtttataactcctcctgaaattggtcctgatgtgccatac |
544 |
Q |
| |
|
||||||| || ||||||||||| ||||||||||| |||||| ||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
13638142 |
agtacaataccaaatattattacgaggttggactcgggaaca--caacaaggcagttttggtttacaactcctcctgaaatcggtcctgatgtgccatac |
13638239 |
T |
|
| Q |
545 |
acatttggtctcatagg |
561 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
13638240 |
acatttggtctaatagg |
13638256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.0000000002
Query Start/End: Original strand, 1476 - 1546
Target Start/End: Original strand, 13715355 - 13715424
Alignment:
| Q |
1476 |
acattgatttactgctcttttcacaagaatactcaatgtgatgttaatcaataaagncatgattatgtaat |
1546 |
Q |
| |
|
|||||||||||| | |||||||| || |||||||| |||||||||||||||||| | ||||||| |||||| |
|
|
| T |
13715355 |
acattgatttaccgttcttttcagaa-aatactcattgtgatgttaatcaataatgtcatgattttgtaat |
13715424 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0188 (Bit Score: 131; Significance: 3e-67; HSPs: 8)
Name: scaffold0188
Description:
Target: scaffold0188; HSP #1
Raw Score: 131; E-Value: 3e-67
Query Start/End: Original strand, 929 - 1147
Target Start/End: Original strand, 10983 - 11201
Alignment:
| Q |
929 |
ggaaaatatacaccacagtaccaatggcttgaacaagagctacctaaagttaacaggacagaaactccttggttgattgttctaatgcattcaccttggt |
1028 |
Q |
| |
|
||||||||||||||||| ||| ||||||||| |||||||||| | ||||||||||| | ||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
10983 |
ggaaaatatacaccacaatacgcgtggcttgaagaagagctaccgagagttaacaggaaaaaaactccgtggttgattgttctcatgcattcaccttggt |
11082 |
T |
|
| Q |
1029 |
ataatagcaacaatcaacattatatggaaggggagacaatgagagtaatgtatgagccatggtttgttaagtacaaggttgatgttgtgtatgctggaca |
1128 |
Q |
| |
|
|||||||||||| | ||||| ||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||| || |
|
|
| T |
11083 |
ataatagcaacagctatcattacatggaaggggaaacaatgagagtaatgtttgagtcatggtttgttaagtacaaggttgatgttgtgtttgctggcca |
11182 |
T |
|
| Q |
1129 |
tgtgcatgcctatgaaaga |
1147 |
Q |
| |
|
||| ||||||||||||||| |
|
|
| T |
11183 |
tgtacatgcctatgaaaga |
11201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0188; HSP #2
Raw Score: 113; E-Value: 2e-56
Query Start/End: Original strand, 563 - 791
Target Start/End: Original strand, 10009 - 10237
Alignment:
| Q |
563 |
gatctcggtcagagctttgattcaaacagaacactttctcactatgaattgaatcctagaaaggggcaaacagtgttgtttgttggagatctctcttatt |
662 |
Q |
| |
|
||||| ||||||| |||||||||||||| ||||||||||||||| ||| ||| | | ||| || ||||| || ||||||||||||||||||| ||| |
|
|
| T |
10009 |
gatcttggtcagacttttgattcaaacaggacactttctcactatcaatcgaactcaacaaaaggacaaaccgttctgtttgttggagatctctcatatg |
10108 |
T |
|
| Q |
663 |
cagataactttccaaatcatgacaatgttaggtgggatacttggggaaggtttgtagaaaggagcacggcttatcagccgtggatatggactgtaggaaa |
762 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||| ||||||||||||||||| ||||| |
|
|
| T |
10109 |
cagataactacccgaatcatgacaatgttaggtgggatacttggggaagatttgcagaaaggagcgttgcttatcaaccgtggatatggactgttggaaa |
10208 |
T |
|
| Q |
763 |
ccatgaaattgattttgccccagaaattg |
791 |
Q |
| |
|
||||||| |||||||||| |||||||||| |
|
|
| T |
10209 |
ccatgaacttgattttgctccagaaattg |
10237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0188; HSP #3
Raw Score: 98; E-Value: 2e-47
Query Start/End: Original strand, 801 - 930
Target Start/End: Original strand, 10397 - 10526
Alignment:
| Q |
801 |
aaccattcaaaccttattcgcaccgataccacactccttataaagcatcacaaagtacttcacccttttggtattctatcagaagagcttcagctcacat |
900 |
Q |
| |
|
|||||||||| |||| ||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || || |
|
|
| T |
10397 |
aaccattcaagcctttttcgcaccgataccaaacgccgtataaagcatcacaaagtacttcacccttttggtattctatcaaaagagcttcagcacatat |
10496 |
T |
|
| Q |
901 |
cattgtcttggcctcgtattcagcatatgg |
930 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
10497 |
cattgtcttggcctcgtattcagcatatgg |
10526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0188; HSP #4
Raw Score: 90; E-Value: 9e-43
Query Start/End: Original strand, 1281 - 1454
Target Start/End: Original strand, 11644 - 11817
Alignment:
| Q |
1281 |
aaccacagccagagtactcagcattcagagaggctagctttggacatgccattttcgacataaagaacagaacacatgctcactatagctggcacagaaa |
1380 |
Q |
| |
|
|||||||||| |||||||| ||||| ||||| || |||||||||||||| ||||| ||||||||||| || ||||||||| ||||||||||||| ||||| |
|
|
| T |
11644 |
aaccacagccggagtactcggcatttagagaagccagctttggacatgcaatttttgacataaagaataggacacatgcttactatagctggcatagaaa |
11743 |
T |
|
| Q |
1381 |
tcaagatggttattcggttgaggctgattcccattggtttttcaacagattttggcaaccagttgatgattcca |
1454 |
Q |
| |
|
|||||||||| || | ||| || |||||||| |||||||||||||||||||||| | || ||||||||||||| |
|
|
| T |
11744 |
tcaagatggtgatgctgttaagagtgattccctttggtttttcaacagattttggaacccggttgatgattcca |
11817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0188; HSP #5
Raw Score: 82; E-Value: 5e-38
Query Start/End: Original strand, 239 - 422
Target Start/End: Original strand, 9003 - 9183
Alignment:
| Q |
239 |
aggttcatattacacaaggtgatcttgttgggaaagaagtgatcgtatcgtgggtgaccgaggatgaaccagggtcgatcgcagtgcgctactggagtac |
338 |
Q |
| |
|
|||||||||| |||||||| |||| ||| ||||||| ||||||||||||||||||||| ||||||||||| |||||| |||||||| |||||||| |
|
|
| T |
9003 |
aggttcatataacacaaggcgatcatgtggggaaagcagtgatcgtatcgtgggtgactgaggatgaacccgggtcggatgcagtgcgttactggag--- |
9099 |
T |
|
| Q |
339 |
tgacaacagcaaacaaaagaagatagctaaagggaaaattggtacctatagattcttcaattactcatctgggtttattcatca |
422 |
Q |
| |
|
||| |||||||| || |||||| | |||||||| ||||||| || ||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
9100 |
tgagaacagcaagcacaagaagcttgctaaaggaaaaattgaaacttatagatacttcaattactcatctggttttattcatca |
9183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0188; HSP #6
Raw Score: 78; E-Value: 1e-35
Query Start/End: Original strand, 445 - 561
Target Start/End: Original strand, 9292 - 9406
Alignment:
| Q |
445 |
agtacaacactaaatattattatgaggttggacttgggaaccaccaacaagacagttttggtttataactcctcctgaaattggtcctgatgtgccatac |
544 |
Q |
| |
|
||||||| || |||||||||||||||||||||||| ||||| ||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
9292 |
agtacaataccaaatattattatgaggttggacttaggaaca--caacaaggcagttttggtttacaactcctcctgcaattggtcctgatgtgccatac |
9389 |
T |
|
| Q |
545 |
acatttggtctcatagg |
561 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
9390 |
acatttggtctcatagg |
9406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0188; HSP #7
Raw Score: 52; E-Value: 4e-20
Query Start/End: Original strand, 1151 - 1250
Target Start/End: Original strand, 11288 - 11387
Alignment:
| Q |
1151 |
gaacgtgtgtcgaatattgcatataatgttgtgaatggtatttgcactcctataaaagatcaatcagctcctgtatacatacccattggagatggaggga |
1250 |
Q |
| |
|
|||||||| || ||||||||||||||| | || |||||||||||| ||||| ||||||||| ||||||||| ||||||||| ||| ||||||||||||| |
|
|
| T |
11288 |
gaacgtgtctcaaatattgcatataatatcgtaaatggtatttgcgctcctgtaaaagatctatcagctccggtatacataaacatcggagatggaggga |
11387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0188; HSP #8
Raw Score: 44; E-Value: 0.000000000000003
Query Start/End: Original strand, 91 - 242
Target Start/End: Original strand, 8213 - 8364
Alignment:
| Q |
91 |
ttattaccactagctttagttttgaatttagtgtcggtgtgtaatggaggcacaaccagtgcttttgttaggaatgttcagaaaggcgttaatatgtcac |
190 |
Q |
| |
|
|||||| |||||| ||| ||||||||||| |||| |||||||||||| | | || ||| |||||||||||| ||| |||| || || ||||| ||| |
|
|
| T |
8213 |
ttattatcactaggtttggttttgaatttggtgtttgtgtgtaatggaagttccacaagtatttttgttaggaaggttgagaagagcattgatatgccac |
8312 |
T |
|
| Q |
191 |
ttgatagtgatgtttttgctgttccttctggttataatgctccccaacaggt |
242 |
Q |
| |
|
||||||| ||||||||| ||||| |||||||||||||||| |||||||| |
|
|
| T |
8313 |
ttgatagcgatgtttttagggttccacctggttataatgctcctcaacaggt |
8364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-16
Query Start/End: Original strand, 833 - 930
Target Start/End: Complemental strand, 10478895 - 10478798
Alignment:
| Q |
833 |
actccttataaagcatcacaaagtacttcacccttttggtattctatcagaagagcttcagctcacatcattgtcttggcctcgtattcagcatatgg |
930 |
Q |
| |
|
||||||||||||||||| ||||||| ||| ||||| |||||||||| ||||||||||| ||||| |||||||| ||||| |||||||||||||| |
|
|
| T |
10478895 |
actccttataaagcatcgcaaagtagcccacacttttcatattctatcaagagagcttcagcacacattattgtcttagcctcatattcagcatatgg |
10478798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 1458 - 1550
Target Start/End: Complemental strand, 33632699 - 33632608
Alignment:
| Q |
1458 |
ctcatgttttccattgatacattgatttactgctcttttcacaagaatactcaatgtgatgttaatcaataaagncatgattatgtaataatt |
1550 |
Q |
| |
|
||||||||| ||||| | ||||||||||||| |||||||| || | |||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
33632699 |
ctcatgtttcccattaacacattgatttactactcttttccaaaacaaactcaatgtgatgttaatcaataaagt-atgattatgcaataatt |
33632608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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