View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: R108-tnk48-12 (Length: 830)
Name: R108-tnk48-12
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk48-12 |
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Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 104 - 572
Target Start/End: Original strand, 25116309 - 25116777
Alignment:
| Q |
104 |
ataagaaaggtgatcgcgacctcattgtcgaacatcctgatccagaaattgacaaaggttcgatgagtgccaaatgagaaacgtgacgnnnnnnnggagt |
203 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||| |
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| T |
25116309 |
ataagaaaggtaatcgcgacctcattgtcgaacatcctgatccagaaattgacaaaggttcgatgagtgc-aaatgagaagcgtgacgaaaaaaaggagt |
25116407 |
T |
|
| Q |
204 |
gtcatacaggtgaaggttacatgattattatagtgaactcatttaagtacgatttgtttattactttaagacatggcattttcagttatgtcgagtgaag |
303 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||| | || |||||||||||||||||||||||| |
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| T |
25116408 |
gtcatacaggtgaaggttacatgatcattatagtgaactcatttacgttcgatttgtttattactttaaaatatttcattttcagttatgtcgagtgaag |
25116507 |
T |
|
| Q |
304 |
cgttttcttacctgaacaaagtcacagagaggttaggaatactcgaggattaccaaaaatttgagaagtccctacatagctacagaatgggaacaattac |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25116508 |
cgttttcttacctgaacaaagtcacagagaggttaggaatactcgaggattaccaaaaatttgagaagtccctacatagctacagaatgggaacaattac |
25116607 |
T |
|
| Q |
404 |
aagagaagaactacaaacaatggtaatgttgtttatacatccaaattttcagaagttacatttttggattttctgtcacatcctataactcttgaattga |
503 |
Q |
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||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
25116608 |
aagagaagaactacaaaaaatggtaatattgtttatacatccaaattttcagaagttacattttttgattttctgtcacatcctataactcttgaattga |
25116707 |
T |
|
| Q |
504 |
atatggcttgcattgaacattaaactttaatacaaaaattatgtt-aaaataccgaaacggagaagaatt |
572 |
Q |
| |
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| T |
25116708 |
atatggcttgcattgaacattaaactttaatacaaaaattatgttaaaaatactgtaacggagaagaatt |
25116777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 25116179 - 25116283
Alignment:
| Q |
1 |
ctgagtaccgagaaggccaacgatttgcaaggtgatcatgatctcattgccaaaaatcttgatccagaatttaacaaaggtttgataagtgcagaggtgt |
100 |
Q |
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| T |
25116179 |
ctgagtaccgagaaggccaaagatttgcaaggtgatcatgatctcattgccaaaaatcttgatccagaatttaacaaaggtttgatgagtgcagaggtgt |
25116278 |
T |
|
| Q |
101 |
ctgat |
105 |
Q |
| |
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||||| |
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| T |
25116279 |
ctgat |
25116283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 753 - 830
Target Start/End: Original strand, 25116106 - 25116183
Alignment:
| Q |
753 |
tgataatggtgtttgaatttcttgaaattgataatcttttaaatgctttttcattaggaatttgtttgtcggactgag |
830 |
Q |
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| T |
25116106 |
tgataatggtgtttgaatttcttgaaattgataatcttttaaatgctttttcattaggaatttgtttgtcgaactgag |
25116183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 111; Significance: 1e-55; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 632 - 746
Target Start/End: Original strand, 11459938 - 11460052
Alignment:
| Q |
632 |
aattggtgttgagtgctaatctctttgttaaactattggtgtagtctaacattgcctatcccttgctgtttcactaaaatacgaaaactatccaaaaaca |
731 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11459938 |
aattggtgttgagtgctaatctctttgttaaactattggtgtagtctaacattgcctatcccttgctgtttcactaaaatacgaaaactatccaaaaaca |
11460037 |
T |
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| Q |
732 |
cttagtagaattcaa |
746 |
Q |
| |
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||||| ||||||||| |
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| T |
11460038 |
cttagcagaattcaa |
11460052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 632 - 746
Target Start/End: Original strand, 11464920 - 11465034
Alignment:
| Q |
632 |
aattggtgttgagtgctaatctctttgttaaactattggtgtagtctaacattgcctatcccttgctgtttcactaaaatacgaaaactatccaaaaaca |
731 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11464920 |
aattggtgttgagtgctaatctctttgttaaactattggtgtagtctaacattgcctatcccttgctgtttcactaaaatacgaaaactatccaaaaaca |
11465019 |
T |
|
| Q |
732 |
cttagtagaattcaa |
746 |
Q |
| |
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||||| ||||||||| |
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| T |
11465020 |
cttagcagaattcaa |
11465034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 569 - 635
Target Start/End: Complemental strand, 504939 - 504873
Alignment:
| Q |
569 |
aattgctagtacacttattgtgattcccaatacaagaatcaaaataggtacaagtatccatagaatt |
635 |
Q |
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| T |
504939 |
aattgctagtacacttattgtgattcccaatacaagaatcaaaataggtacaagtatccatagaatt |
504873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 569 - 635
Target Start/End: Complemental strand, 6928871 - 6928805
Alignment:
| Q |
569 |
aattgctagtacacttattgtgattcccaatacaagaatcaaaataggtacaagtatccatagaatt |
635 |
Q |
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|
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| T |
6928871 |
aattgctagtacacttattgtgattcccaatacaagaatcaaaataggtacaagtatccatagaatt |
6928805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 569 - 635
Target Start/End: Complemental strand, 14541436 - 14541370
Alignment:
| Q |
569 |
aattgctagtacacttattgtgattcccaatacaagaatcaaaataggtacaagtatccatagaatt |
635 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14541436 |
aattgctagtacacttattgtgattcccaatacaagaatcaaaataggtacaagtatccatagaatt |
14541370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 569 - 635
Target Start/End: Original strand, 53091966 - 53092032
Alignment:
| Q |
569 |
aattgctagtacacttattgtgattcccaatacaagaatcaaaataggtacaagtatccatagaatt |
635 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53091966 |
aattgctagtacacttattgtgattcccaatacaagaatcaaaataggtacaagtatccatagaatt |
53092032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 569 - 603
Target Start/End: Original strand, 53091926 - 53091960
Alignment:
| Q |
569 |
aattgctagtacacttattgtgattcccaatacaa |
603 |
Q |
| |
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||||||||||||| ||||||||||||||||||||| |
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| T |
53091926 |
aattgctagtacaattattgtgattcccaatacaa |
53091960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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