View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: R108-tnk48-2 (Length: 1655)
Name: R108-tnk48-2
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk48-2 |
 | |
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| [»] chr3 (4 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 648; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 648; E-Value: 0
Query Start/End: Original strand, 760 - 1655
Target Start/End: Original strand, 47118584 - 47119477
Alignment:
| Q |
760 |
aattgtcaccttcatcgacgagaaagtcgtgacatntcttgaccgaacaaaagttttcaaa-gttgggaatgccaacttccatggatncattcaagcgtt |
858 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||| |||||||| |||||||||||| |
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|
| T |
47118584 |
aattgtcaccttcatcgacgagaaagtcgtgacat-tcttgaccgaacaaaccttttcaaacgttgggaatgccaactcccatggat-cattcaagcgtt |
47118681 |
T |
|
| Q |
859 |
tataagggtacaatcgattgaaacacttgaaactttggtggtaatgaaaacatgtttcatttggcaacatattcacattgcgatacatgacatcatgtat |
958 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||| |
|
|
| T |
47118682 |
tataagg-tacaatcgatttaaacacttgaaactttggtggtaatgaaaacatgtttcattagacaacatattcacatta---------acatcatgtat |
47118771 |
T |
|
| Q |
959 |
caagtctccaaacaacttgttgacattttaaaatccatggctcaaaataagtttcaacaagccaagaatttggaggttgtgtgagttgattctggcgaca |
1058 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
47118772 |
taagtctccaaacaacttgttgacatttaaaaatccatggttcaaaataagtttcaacaagtcaagaatttggaggttgtgtgagttgattctggtgaca |
47118871 |
T |
|
| Q |
1059 |
atttaatcatcaacactccataagggtatgtaagggagccaattactggcaaacattttctcaacaatgccatctgatttctatacaatgccacgattga |
1158 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
47118872 |
atttaatcatcaacactccataagg-tatgcaagggagccaattacaggcaaacattt-ctcagcaatgccatctgatttctatacaatgccacgattga |
47118969 |
T |
|
| Q |
1159 |
tgattggggacaaccaatggttaatgacgttgttgatggaagctggattaagttgtggttgggtgagattcctcaactancatncttgtgcctcgggcga |
1258 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
47118970 |
tgattggggacaaccaatggctaatgatgttgttgatggaagctggattaagttgtggttgggtgagattcctcaactatcattcttgtgcctcgggcga |
47119069 |
T |
|
| Q |
1259 |
ttaacaacgagggaggaattatatatccagttgtgggttcccaaactactctagttaagagttaggtacaattatttttgagnnnnnnnagctacactaa |
1358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
47119070 |
ttaacaacgagggaggaattatatatccagttgtgggctcccaaactactttagttaagagttaggtacaattatttttgagtttttttagctacactaa |
47119169 |
T |
|
| Q |
1359 |
aaaatgcataaataaaagcaaactttccctttctaccctcctatgaccccaccaaaacttatctatgatgcttttaatctctttgcaacaa--------- |
1449 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
47119170 |
aaaatgcataaataaaagcaaacttt-cctttcta-cctcctatgaccccaccaaaacttatctatgatgctttaaatctctttgcaacaatcctctagg |
47119267 |
T |
|
| Q |
1450 |
----tgtacaactaatgatgtagttaggaatcgcttaagctactgctttaatcgaaacttcatcaccttctcttgaacgaaatgcctcatgtcgtccatt |
1545 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47119268 |
agcttgtacaactaatgatgtagttaggaatcgcttaagctactgctttaatcgaaacttcatcaccttctcttgaacgaaatgcctcatgtcgtccatt |
47119367 |
T |
|
| Q |
1546 |
tagctacttccagactcagtcaaccgaaaaggagttttgttttggaagaggtgaaacgttcatcgatatccttaaagatatatcttactcttcaattnca |
1645 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| || |
|
|
| T |
47119368 |
tagcttcttccagactcagtcaaccgaaaaggagttttgttttggaagaggtgaaacgttcatcgatttccttaaagatatatctttctcttcaatttca |
47119467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Original strand, 47119473 - 47119935
Alignment:
| Q |
1 |
ctttgcttcatttttctcgtccatatcatcacaatccttgattagatgcttgtttcatccatatacaaatcaaaaagtggttcattgtatttaagtggac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
47119473 |
ctttgcttcatttttctcgtccatatcatcacaatccttgattagatgcttgtttcatccatatacaaattaaaaagtggttcattgtatttaagtggac |
47119572 |
T |
|
| Q |
101 |
acgaaggtttttaccttggtatttgaccacaatttattttgcaaggcgcttaaaaagatcaacatatgcatgctttggcacaaatgaacttctccactat |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
47119573 |
gcgaaggtttttaccttggtatttgaccgcaatttattttgcaaggcgcttaaaaagatcaacatatgcatgctttggcacaaatgaacttgtccactat |
47119672 |
T |
|
| Q |
201 |
atatcattccttgttatctaccctcgtaaacttccccaagtttcttcgctattgcattcaattttaatttaaagggcatatcataaatcctcactcaaag |
300 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
47119673 |
atatcattccttgttatccaccctcgtaaacttccctaagtttcttcgctattgcattcaattttaatttaaagggcatatcataaatcctcacacaaag |
47119772 |
T |
|
| Q |
301 |
ttcacctgattgcatctctaaatcagaaggttgattgtcctcgaagagtaatttcaaaacaataatgtttcaatttcaatcaactctccaaaagccattc |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
47119773 |
ttcacctgattgcatctctaaatcagaaggttgattgtcctcgaagagtaatttcaaaacaatgatg------tttcaatcaactctccaaaagccattc |
47119866 |
T |
|
| Q |
401 |
atgaggaccaaatccacatccctctttgttatgtcccatacctatactgagtttttaatctccaagctt |
469 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
47119867 |
atgaggaccaaatccacatccctctttgttatgtcccagacctatactgagtttttaatctccaagctt |
47119935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 489 - 763
Target Start/End: Original strand, 47119978 - 47120252
Alignment:
| Q |
489 |
gacaagagatttgacgaagatttcgtccccacaactctcaatatcttctgcttcaaccctctcctccgcttcttcctttgtgagttccacctttttgcaa |
588 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
47119978 |
gacaagagatttgacgaagatttcgtcaccacaactctcaatatcttctgcttcaaccctctcctctgcttcttcctttgtgagttccacctttttgcaa |
47120077 |
T |
|
| Q |
589 |
ctatccattgagaagagaaacaacaagaacctattaagaagaaacaaatttcatgtcatgaggaccaaatttattggcatgaaagccttcgcaaaccaat |
688 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
47120078 |
ctatccattgagaagagaaacaacaagaacctattaagaagaaacaaatttcatgtcatgaggaccaaatttactggcatgaaagccttcgcaaaccaat |
47120177 |
T |
|
| Q |
689 |
taaagaaaacctgatttggttagagagagttagacttcactctaaaacacatttttatttatttatttatgaatt |
763 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47120178 |
taaagaaaacctgatttggttagagagagttagacttcactctaaaacacatttttatttatttatttatgaatt |
47120252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 950 - 1081
Target Start/End: Original strand, 1585308 - 1585439
Alignment:
| Q |
950 |
atcatgtatcaagtctccaaacaacttgttgacattttaaaatccatggctcaaaataagtttcaacaagccaagaatttggaggttgtgtgagttgatt |
1049 |
Q |
| |
|
|||||||||||||||| ||||||| ||| ||| ||| | ||| |||||| | ||||| |||||||||||||| | ||||||||||| ||| ||| |
|
|
| T |
1585308 |
atcatgtatcaagtcttcaaacaaattgatgaaattattaaactaatggcttacaataaagttcaacaagccaaggaattggaggttgtacgagccaatt |
1585407 |
T |
|
| Q |
1050 |
ctggcgacaatttaatcatcaacactccataa |
1081 |
Q |
| |
|
|||| || |||||| ||| |||| |||||||| |
|
|
| T |
1585408 |
ctggtgaaaatttagtcaccaacgctccataa |
1585439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 4e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 4e-20
Query Start/End: Original strand, 924 - 1043
Target Start/End: Complemental strand, 34402684 - 34402567
Alignment:
| Q |
924 |
aacatattcacattgcgatacatgacatcatgtatcaagtctccaaacaacttgttgacattttaaaatccatggctcaaaataagtttcaacaagccaa |
1023 |
Q |
| |
|
|||||||| |||| | |||||||||||| ||||||||||||||||||||||||||||||| | | ||| | |||| || ||| ||||||||||||||||| |
|
|
| T |
34402684 |
aacatattgacatggagatacatgacat-atgtatcaagtctccaaacaacttgttgacactatgaaacctatggttc-aaacaagtttcaacaagccaa |
34402587 |
T |
|
| Q |
1024 |
gaatttggaggttgtgtgag |
1043 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
34402586 |
atatttggaggctgtgtgag |
34402567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.0000000002
Query Start/End: Original strand, 940 - 1042
Target Start/End: Complemental strand, 16612174 - 16612074
Alignment:
| Q |
940 |
gatacatgacatcatgtatcaagtctccaaacaacttgttgacattttaaaatccatggctcaaaataagtttcaacaagccaagaatttggaggttgtg |
1039 |
Q |
| |
|
||||| ||||||||||||| | | ||||||||||||| ||||||| | ||| | |||| | ||||| ||||||||||||||||| ||||||| ||| || |
|
|
| T |
16612174 |
gatacgtgacatcatgtataa--tttccaaacaacttgctgacattgtgaaaccaatggttaaaaatgagtttcaacaagccaaggatttggaagttatg |
16612077 |
T |
|
| Q |
1040 |
tga |
1042 |
Q |
| |
|
||| |
|
|
| T |
16612076 |
tga |
16612074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000003
Query Start/End: Original strand, 940 - 1039
Target Start/End: Original strand, 33398156 - 33398255
Alignment:
| Q |
940 |
gatacatgacatcatgtatcaagtctccaaacaacttgttgacattttaaaatccatggctcaaaataagtttcaacaagccaagaatttggaggttgtg |
1039 |
Q |
| |
|
||||||||||||| ||||||||| ||| |||||||||||| ||||| | ||| |||| |||||||||| |||||||| ||||| |||| ||||||||| |
|
|
| T |
33398156 |
gatacatgacatcgtgtatcaagcctctaaacaacttgtttacattatgaaactcatgtttcaaaataagattcaacaaaccaaggatttcgaggttgtg |
33398255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 0.000000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000003
Query Start/End: Original strand, 940 - 1039
Target Start/End: Original strand, 25810801 - 25810900
Alignment:
| Q |
940 |
gatacatgacatcatgtatcaagtctccaaacaacttgttgacattttaaaatccatggctcaaaataagtttcaacaagccaagaatttggaggttgtg |
1039 |
Q |
| |
|
||||||||||| | ||||||| |||||||||||||||| ||||||| | ||| ||||| ||||||| |||||||| ||||||| ||||||||| |||| |
|
|
| T |
25810801 |
gatacatgacaccgtgtatcatgtctccaaacaacttgctgacattgtgaaacccatgattcaaaatgagtttcaagaagccaaagatttggaggatgtg |
25810900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 943 - 1038
Target Start/End: Complemental strand, 4995223 - 4995128
Alignment:
| Q |
943 |
acatgacatcatgtatcaagtctccaaacaacttgttgacattttaaaatccatggctcaaaataagtttcaacaagccaagaatttggaggttgt |
1038 |
Q |
| |
|
|||||||||||||| | |||||| ||||||||||| ||| | | | ||| |||||| ||||||| ||||||||| || || | |||||||||||| |
|
|
| T |
4995223 |
acatgacatcatgttttaagtcttcaaacaacttgctgaaaatgtgaaacccatggttcaaaatgagtttcaacgagacatgggtttggaggttgt |
4995128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000004; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000004
Query Start/End: Original strand, 925 - 1029
Target Start/End: Complemental strand, 43341034 - 43340931
Alignment:
| Q |
925 |
acatattcacattgcgatacatgacatcatgtatcaagtctccaaacaacttgttgacattttaaaatccatggctcaaaataagtttcaacaagccaag |
1024 |
Q |
| |
|
||||||| |||| | |||||||||||| |||||| |||||||||||||| ||| | ||||| | || |||||| ||||||||||||||| ||| |||| |
|
|
| T |
43341034 |
acatattgacatggagatacatgacattatgtat-aagtctccaaacaatttgctcacattatgtaacccatggtccaaaataagtttcaataagtcaag |
43340936 |
T |
|
| Q |
1025 |
aattt |
1029 |
Q |
| |
|
||||| |
|
|
| T |
43340935 |
aattt |
43340931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 933 - 998
Target Start/End: Complemental strand, 8947679 - 8947614
Alignment:
| Q |
933 |
acattgcgatacatgacatcatgtatcaagtctccaaacaacttgttgacattttaaaatccatgg |
998 |
Q |
| |
|
|||||| | ||||||||||| |||||||||| |||||| |||||||||||||| | ||| |||||| |
|
|
| T |
8947679 |
acattggggtacatgacatcctgtatcaagtatccaaagaacttgttgacattgtgaaacccatgg |
8947614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 950 - 991
Target Start/End: Complemental strand, 47295536 - 47295495
Alignment:
| Q |
950 |
atcatgtatcaagtctccaaacaacttgttgacattttaaaa |
991 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||| ||||| |
|
|
| T |
47295536 |
atcatgtatcaagtcttcaaacaacttgctgacattgtaaaa |
47295495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000004
Query Start/End: Original strand, 899 - 975
Target Start/End: Original strand, 21770691 - 21770767
Alignment:
| Q |
899 |
gtaatgaaaacatgtttcatttggcaacatattcacattgcgatacatgacatcatgtatcaagtctccaaacaact |
975 |
Q |
| |
|
||||||| ||| | ||||||| | || |||||| |||| | ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
21770691 |
gtaatgacaacgtctttcattagacatcatattgacatggagatacatgacatcatgtatcatgtctccaaacaact |
21770767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 940 - 985
Target Start/End: Original strand, 9429415 - 9429460
Alignment:
| Q |
940 |
gatacatgacatcatgtatcaagtctccaaacaacttgttgacatt |
985 |
Q |
| |
|
|||||||||||| ||||||| |||||||||| |||||||||||||| |
|
|
| T |
9429415 |
gatacatgacataatgtatcgagtctccaaaaaacttgttgacatt |
9429460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 944 - 1038
Target Start/End: Original strand, 23164168 - 23164262
Alignment:
| Q |
944 |
catgacatcatgtatcaagtctccaaacaacttgttgacattttaaaatccatggctcaaaataagtttcaacaagccaagaatttggaggttgt |
1038 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| || |||| | ||| ||| || || |||| |||||| | ||||| | |||||||| |||| |
|
|
| T |
23164168 |
catgacatcgtgtatcaagtctccaaacaacttgatgtcattgtgaaacccaaggtccataataggtttcatctagccatgtatttggagattgt |
23164262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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