View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: R108-tnk48-5 (Length: 472)
Name: R108-tnk48-5
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk48-5 |
 | |
|
| [»] scaffold0024 (3 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Original strand, 49613761 - 49614168
Alignment:
| Q |
1 |
actaccccagtgagtcctacattacggattatgttgctgttttggatttccttattaatactggcaaggatgtggatatacttgttcagaagaaaatact |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49613761 |
actaccctagtgagtcctacattacggattatgttgctgttttggatttccttattaatactggcaaggatgtggatatacttgttcagaagaaaatact |
49613860 |
T |
|
| Q |
101 |
ggtgaattggcttggggataatgattctgtggctaacttgtttaatagtctttggaaaaatgttacacatttgaatttcagttctcagtactctattcta |
200 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
49613861 |
ggtgaattggcttggggatagtgattctgtggctaacttgtttaatagtctttggaaaaatgttacacatttgtatttcagttctcagtactctattcta |
49613960 |
T |
|
| Q |
201 |
tgtgaagacttgaatggtttttgtcatgatccttggcatagattgaaggcgactctcagacgtgattattgcaacagtccttggcaaactgctgcttcca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49613961 |
tgtgaagacttgaatggtttttgtcatgatccttggcatagattgaaggcgactctcagacgtgattattgcaacagtccttggcaaactgctgcttcca |
49614060 |
T |
|
| Q |
301 |
ttgctggaattttactacttattctctctttacttcaatcagtttgtgcagtgttgcaagttgtacaacaatataatgattcatagtaagttcaatcatt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49614061 |
ttgctggaattttactacttattctctctttacttcaatcagtttgtgcagtgttgcaagttgtacaacaatataatgattcatagtaagttcaatcatt |
49614160 |
T |
|
| Q |
401 |
ggtgaatt |
408 |
Q |
| |
|
| |||||| |
|
|
| T |
49614161 |
gttgaatt |
49614168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 27 - 378
Target Start/End: Original strand, 49618763 - 49619113
Alignment:
| Q |
27 |
gattatgttgctgttttggatttccttattaatactggcaaggatgtggatatacttgttcagaagaaaatactggtgaattggcttggggataatgatt |
126 |
Q |
| |
|
|||||| || |||||||||||| |||||| |||| || | ||||| ||||||||||||||||| ||||| || ||| ||||| || | ||||| |
|
|
| T |
49618763 |
gattatatttctgttttggattaccttataaatatcggtagggatgcggatatacttgttcagagaggaatacaggataatatgcttgcagacagtgatt |
49618862 |
T |
|
| Q |
127 |
ctgtggctaacttgtttaatagtctttggaaaaatgttacacatttgaatttcagttctcagtactctattctatgtgaagacttgaatggtttttgtca |
226 |
Q |
| |
|
||||||| ||||||| |||| ||||||||||||||||| ||||| | |||||||||||||| | || | |||| | ||||||||| |||||||||| | |
|
|
| T |
49618863 |
ctgtggcaaacttgtataatggtctttggaaaaatgtttcacatataaatttcagttctcatttctgtcttcttcctaaagacttga-tggtttttgtaa |
49618961 |
T |
|
| Q |
227 |
tgatccttggcatagattgaaggcgactctcagacgtgattattgcaacagtccttggcaaactgctgcttccattgctggaattttactacttattctc |
326 |
Q |
| |
|
| |||||||||||| | ||||||| |||||||| ||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
49618962 |
taatccttggcataaactgaaggctactctcaggcgtgattatggcagtactccttggcaaactgctgcttccattgctggaattttactacttgttctc |
49619061 |
T |
|
| Q |
327 |
tctttacttcaatcagtttgtgcagtgttgcaagttgtacaacaatataatg |
378 |
Q |
| |
|
||||||||||||||||||||| | | |||||||||||||| || ||||||| |
|
|
| T |
49619062 |
tctttacttcaatcagtttgttctatcttgcaagttgtacagcagtataatg |
49619113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 405 - 472
Target Start/End: Original strand, 49613698 - 49613765
Alignment:
| Q |
405 |
aattgaaagttgaggattggactgaaattttgtttcggaatatggttgctttggagcaatgtcactac |
472 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49613698 |
aattgaaagttgaggattggactgaaattttgtttcggaatatggttgctttggagcaatgtcactac |
49613765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 227 - 401
Target Start/End: Original strand, 49617634 - 49617802
Alignment:
| Q |
227 |
tgatccttggcatagattgaaggcgactctcagacgtgattattgcaacagtccttggcaaactgctgcttccattgctggaattttactacttattctc |
326 |
Q |
| |
|
|||| |||||| || ||||||||| |||||||| | ||||| ||||| ||| |||||| | |||||||| |||||||||||||||||||||| || |
|
|
| T |
49617634 |
tgatgcttggcttaaattgaaggctactctcaggcatgatttttgcactagt---tggcaa-cagctgcttctgttgctggaattttactacttat--tc |
49617727 |
T |
|
| Q |
327 |
tctttacttcaatcagtttgtgcagtgttgcaagttgtacaacaatataatgattcatagtaagttcaatcattg |
401 |
Q |
| |
|
||||||||||||||||||| | | || |||| |||| | | ||||||||||| || |||| ||||||||||||| |
|
|
| T |
49617728 |
tctttacttcaatcagtttattctgtcttgcgagttatgaagcaatataatgactcctagtgagttcaatcattg |
49617802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 157 - 205
Target Start/End: Original strand, 49617554 - 49617602
Alignment:
| Q |
157 |
aaaatgttacacatttgaatttcagttctcagtactctattctatgtga |
205 |
Q |
| |
|
|||||||| |||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
49617554 |
aaaatgttgcacatttgaatttctgttctcattactctattctatgtga |
49617602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 169; Significance: 2e-90; HSPs: 25)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 27 - 371
Target Start/End: Original strand, 2934950 - 2935294
Alignment:
| Q |
27 |
gattatgttgctgttttggatttccttattaatactggcaaggatgtggatatacttgttcagaagaaaatactggtgaattggcttggggataatgatt |
126 |
Q |
| |
|
|||||||||||||| |||||| |||||| |||||||| | ||||| ||||||||||||| ||| |||||||| ||| ||||| ||||| ||||| |
|
|
| T |
2934950 |
gattatgttgctgtcatggattaccttataaatactggtacggatgctgatatacttgttcggaacgaaatactgcataatatgcttgcggatagtgatt |
2935049 |
T |
|
| Q |
127 |
ctgtggctaacttgtttaatagtctttggaaaaatgttacacatttgaatttcagttctcagtactctattctatgtgaagacttgaatggtttttgtca |
226 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| | ||| |||||||||| | |||||||||||| ||||||| |||| ||||||| | |
|
|
| T |
2935050 |
ctgtggctaacttgtttaatggtctttggaaaaatgttacacaatctaatatcagttctcatttctctattctatgcaaagacttaaatgctttttgtaa |
2935149 |
T |
|
| Q |
227 |
tgatccttggcatagattgaaggcgactctcagacgtgattattgcaacagtccttggcaaactgctgcttccattgctggaattttactacttattctc |
326 |
Q |
| |
|
|||||||||||| |||||||| |||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
2935150 |
gaatccttggcataagttgaaggctactctcaggcgtgattattgcaaaactccttggcaaactgctgcttccattgctggaatcttactactttttctc |
2935249 |
T |
|
| Q |
327 |
tctttacttcaatcagtttgtgcagtgttgcaagttgtacaacaa |
371 |
Q |
| |
|
|||||||||||||||||||| | || |||||||||||||||||| |
|
|
| T |
2935250 |
actttacttcaatcagtttgttctgtcttgcaagttgtacaacaa |
2935294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 27 - 368
Target Start/End: Original strand, 2937811 - 2938152
Alignment:
| Q |
27 |
gattatgttgctgttttggatttccttattaatactggcaaggatgtggatatacttgttcagaagaaaatactggtgaattggcttggggataatgatt |
126 |
Q |
| |
|
|||||||||| ||||||||||| |||||| ||||| || ||||||| || |||||||||| ||| |||||||||| ||||||||||| || | ||||| |
|
|
| T |
2937811 |
gattatgttgttgttttggattaccttataaataccggtaaggatgcgggtatacttgtttggaacaaaatactggaaaattggcttggagacagtgatt |
2937910 |
T |
|
| Q |
127 |
ctgtggctaacttgtttaatagtctttggaaaaatgttacacatttgaatttcagttctcagtactctattctatgtgaagacttgaatggtttttgtca |
226 |
Q |
| |
|
|||||||||| ||||||||| ||||||| ||||||||| | ||| || |||||||||| | ||||||||| || |||| || |||| ||| || |
|
|
| T |
2937911 |
ctgtggctaatttgtttaatggtctttgcaaaaatgttgtatattctgatatcagttctcaattctctattctttgcaaagaattaaatgctttctgcag |
2938010 |
T |
|
| Q |
227 |
tgatccttggcatagattgaaggcgactctcagacgtgattattgcaacagtccttggcaaactgctgcttccattgctggaattttactacttattctc |
326 |
Q |
| |
|
| |||||||||||| |||||||| ||||| || ||||||||| |||| | ||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2938011 |
taatccttggcataagttgaaggctactctgaggcgtgattatggcaaaactccttggcaaactgctgcttccattgctggaatcttactacttattctc |
2938110 |
T |
|
| Q |
327 |
tctttacttcaatcagtttgtgcagtgttgcaagttgtacaa |
368 |
Q |
| |
|
|||||||||||||||||||| | || ||||||||||||||| |
|
|
| T |
2938111 |
actttacttcaatcagtttgttctgtcttgcaagttgtacaa |
2938152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 37 - 368
Target Start/End: Original strand, 2927521 - 2927852
Alignment:
| Q |
37 |
ctgttttggatttccttattaatactggcaaggatgtggatatacttgttcagaagaaaatactggtgaattggcttggggataatgattctgtggctaa |
136 |
Q |
| |
|
|||||||||||| |||||| |||||||| ||||||||||||||||||||||||| | ||||||||| ||| |||||| || ||||||||||||||| |
|
|
| T |
2927521 |
ctgttttggattaccttataaatactggtaaggatgtggatatacttgttcagagggaaatactggaaaatatgcttggagacggtgattctgtggctaa |
2927620 |
T |
|
| Q |
137 |
cttgtttaatagtctttggaaaaatgttacacatttgaatttcagttctcagtactctattctatgtgaagacttgaatggtttttgtcatgatccttgg |
236 |
Q |
| |
|
|||||||||| ||||| | ||||||||||||| || | |||||||||| | ||||||||| || ||||||| |||| || |||| | |||| | |
|
|
| T |
2927621 |
cttgtttaatggtcttggtaaaaatgttacacgttctacaatcagttctcaattctctattctttgcaaagacttaaatgcttattgtaagaatccacga |
2927720 |
T |
|
| Q |
237 |
catagattgaaggcgactctcagacgtgattattgcaacagtccttggcaaactgctgcttccattgctggaattttactacttattctctctttacttc |
336 |
Q |
| |
|
|||| |||||||| |||||||| |||||||||||||| | ||||||||||||||||||||||||||| ||||| ||||||||| ||||| ||||||||| |
|
|
| T |
2927721 |
cataagttgaaggctactctcaggcgtgattattgcaaaactccttggcaaactgctgcttccattgcgggaatcttactacttgttctcactttacttc |
2927820 |
T |
|
| Q |
337 |
aatcagtttgtgcagtgttgcaagttgtacaa |
368 |
Q |
| |
|
||||||||||| | || ||||||||||||||| |
|
|
| T |
2927821 |
aatcagtttgttctgtcttgcaagttgtacaa |
2927852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 21 - 368
Target Start/End: Complemental strand, 2997106 - 2996759
Alignment:
| Q |
21 |
attacggattatgttgctgttttggatttccttattaatactggcaaggatgtggatatacttgttcagaagaaaatactggtgaattggcttggggata |
120 |
Q |
| |
|
||||| ||||||||| |||||||||||| |||||| || ||||| |||||||| |||||||||||||| || ||||||||| ||||||||||| || | |
|
|
| T |
2997106 |
attactgattatgtttctgttttggattaccttataaacactggtaaggatgttgatatacttgttcacaaagaaatactggaaaattggcttggagaca |
2997007 |
T |
|
| Q |
121 |
atgattctgtggctaacttgtttaatagtctttggaaaaatgttacacatttgaatttcagttctcagtactctattctatgtgaagacttgaatggttt |
220 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| | ||||||| |||| ||| |||||||||| | ||||||||| || | ||||| |||| ||| |
|
|
| T |
2997006 |
gtgattctgtggctaacttgtttaatggtctttgcataaatgttgtacataccaatatcagttctcaattctctattctttgcaaggacttaaatgcttt |
2996907 |
T |
|
| Q |
221 |
ttgtcatgatccttggcatagattgaaggcgactctcagacgtgattattgcaacagtccttggcaaactgctgcttccattgctggaattttactactt |
320 |
Q |
| |
|
|||| |||||||||||| |||||||| |||||||| ||||||||| |||| | |||||||||| ||||||||||| ||||||||||| |||||||| |
|
|
| T |
2996906 |
ttgtaggaatccttggcataagttgaaggctactctcaggcgtgattatggcaagactccttggcaagctgctgcttcctttgctggaattgtactactt |
2996807 |
T |
|
| Q |
321 |
attctctctttacttcaatcagtttgtgcagtgttgcaagttgtacaa |
368 |
Q |
| |
|
||||| |||| |||||||||||||| | || ||||||||||||||| |
|
|
| T |
2996806 |
gttctcacttttattcaatcagtttgttctgtcttgcaagttgtacaa |
2996759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 27 - 368
Target Start/End: Original strand, 2929660 - 2930001
Alignment:
| Q |
27 |
gattatgttgctgttttggatttccttattaatactggcaaggatgtggatatacttgttcagaagaaaatactggtgaattggcttggggataatgatt |
126 |
Q |
| |
|
||||||||| || || ||||||| ||||| |||||||| ||||| | ||||||||| ||||||| ||||||||| |||||| |||| || ||| ||| |
|
|
| T |
2929660 |
gattatgttactattatggattttcttataaatactggtaaggacgccgatatacttattcagaaagaaatactggaaaattggtttggagacaatcatt |
2929759 |
T |
|
| Q |
127 |
ctgtggctaacttgtttaatagtctttggaaaaatgttacacatttgaatttcagttctcagtactctattctatgtgaagacttgaatggtttttgtca |
226 |
Q |
| |
|
||||||||||| |||||||| || |||| ||| || ||| ||||| ||| ||||| |||| | |||||||||||| ||||||| |||| ||||||| | |
|
|
| T |
2929760 |
ctgtggctaacatgtttaatggtttttgcaaatatattatacattctaatatcagtcctcatttctctattctatgcaaagacttaaatgctttttgtta |
2929859 |
T |
|
| Q |
227 |
tgatccttggcatagattgaaggcgactctcagacgtgattattgcaacagtccttggcaaactgctgcttccattgctggaattttactacttattctc |
326 |
Q |
| |
|
||||||||||||| |||||||| |||||||| ||||||||||| | | ||||||||||||||||||||||||||||||| | ||||||||| ||||| |
|
|
| T |
2929860 |
gaatccttggcataggttgaaggctactctcaggcgtgattattgaagtactccttggcaaactgctgcttccattgctggattcttactactttttctc |
2929959 |
T |
|
| Q |
327 |
tctttacttcaatcagtttgtgcagtgttgcaagttgtacaa |
368 |
Q |
| |
|
|||||||||||||||||||| | || ||||||||||||||| |
|
|
| T |
2929960 |
actttacttcaatcagtttgttctgtcttgcaagttgtacaa |
2930001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 37 - 347
Target Start/End: Complemental strand, 3003501 - 3003191
Alignment:
| Q |
37 |
ctgttttggatttccttattaatactggcaaggatgtggatatacttgttcagaagaaaatactggtgaattggcttggggataatgattctgtggctaa |
136 |
Q |
| |
|
|||||||||||| |||||| ||||||| ||||||||||||||||||||||||| ||||||||| ||| |||||| || | ||||||||||||||| |
|
|
| T |
3003501 |
ctgttttggattaccttataaatactgctaaggatgtggatatacttgttcagagcgaaatactggaaaatatgcttggagacagtgattctgtggctaa |
3003402 |
T |
|
| Q |
137 |
cttgtttaatagtctttggaaaaatgttacacatttgaatttcagttctcagtactctattctatgtgaagacttgaatggtttttgtcatgatccttgg |
236 |
Q |
| |
|
|||||||||| ||||| | ||| || ||| || || | |||||||||| | ||||||||| | ||||||| |||| || |||| | |||| ||| |
|
|
| T |
3003401 |
cttgtttaatggtcttggcaaagatattatacgttctacaatcagttctcaattctctattcttggcaaagacttaaatgcttattgtaagaatccatgg |
3003302 |
T |
|
| Q |
237 |
catagattgaaggcgactctcagacgtgattattgcaacagtccttggcaaactgctgcttccattgctggaattttactacttattctctctttacttc |
336 |
Q |
| |
|
|||| |||||||| |||||||| |||||||||||||| | ||| ||||||||||||||||||||||||||||| ||||| ||| |||| ||||||||| |
|
|
| T |
3003301 |
cataagttgaaggctactctcaggcgtgattattgcaaaactccctggcaaactgctgcttccattgctggaatcttactccttgctctcactttacttc |
3003202 |
T |
|
| Q |
337 |
aatcagtttgt |
347 |
Q |
| |
|
|| |||||||| |
|
|
| T |
3003201 |
aaacagtttgt |
3003191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 40 - 368
Target Start/End: Original strand, 2974371 - 2974699
Alignment:
| Q |
40 |
ttttggatttccttattaatactggcaaggatgtggatatacttgttcagaagaaaatactggtgaattggcttggggataatgattctgtggctaactt |
139 |
Q |
| |
|
||||||||| |||||| |||||| | | |||||||||||||||||||| || || |||||| ||||||||||| || | ||||||||| |||| ||| |
|
|
| T |
2974371 |
ttttggattaccttataaatactagtacggatgtggatatacttgttcggagcaatatactgcaaaattggcttggagacagtgattctgttgctatctt |
2974470 |
T |
|
| Q |
140 |
gtttaatagtctttggaaaaatgttacacatttgaatttcagttctcagtactctattctatgtgaagacttgaatggtttttgtcatgatccttggcat |
239 |
Q |
| |
|
|||||| ||||| | ||||| ||||| ||| ||| |||||||||| | ||||||||| || |||| ||||||| || |||| ||||||||||| |
|
|
| T |
2974471 |
atttaatggtcttggagaaaatattacaaattctaatatcagttctcatttctctattctttgcaaagaattgaatgcttattgtaggaatccttggcat |
2974570 |
T |
|
| Q |
240 |
agattgaaggcgactctcagacgtgattattgcaacagtccttggcaaactgctgcttccattgctggaattttactacttattctctctttacttcaat |
339 |
Q |
| |
|
|| |||||||| |||| || |||||||||||||| | ||||||||| |||||||||||||||||||||||||| |||||| ||||| || || ||||| |
|
|
| T |
2974571 |
aggttgaaggctgctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggaatttttctacttgttctcactataattcaaa |
2974670 |
T |
|
| Q |
340 |
cagtttgtgcagtgttgcaagttgtacaa |
368 |
Q |
| |
|
||||||| | || |||||||| |||||| |
|
|
| T |
2974671 |
gagtttgttctgtcttgcaagtagtacaa |
2974699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 11 - 224
Target Start/End: Complemental strand, 2658728 - 2658515
Alignment:
| Q |
11 |
tgagtcctacattacggattatgttgctgttttggatttccttattaatactggcaaggatgtggatatacttgttcagaagaaaatactggtgaattgg |
110 |
Q |
| |
|
|||||| || ||||| |||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||| || |||||||||| |||||| |
|
|
| T |
2658728 |
tgagtcatatattactgattatgttgctgttttggattaccttataaatactggtaaggatgtggatatacttgttccaaacaaaatactggaaaattgg |
2658629 |
T |
|
| Q |
111 |
cttggggataatgattctgtggctaacttgtttaatagtctttggaaaaatgttacacatttgaatttcagttctcagtactctattctatgtgaagact |
210 |
Q |
| |
|
||||| || | ||||||||||||||||||||||| | ||||||| ||||||||||| |||| ||| |||| |||| | | ||||||| |||||||||| |
|
|
| T |
2658628 |
cttggagacagtgattctgtggctaacttgtttactggtctttgcaaaaatgttactcattgtaatagcagtcctcatttcactattctttgtgaagact |
2658529 |
T |
|
| Q |
211 |
tgaatggtttttgt |
224 |
Q |
| |
|
| || | ||||||| |
|
|
| T |
2658528 |
taaaagatttttgt |
2658515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 11 - 224
Target Start/End: Original strand, 2964844 - 2965057
Alignment:
| Q |
11 |
tgagtcctacattacggattatgttgctgttttggatttccttattaatactggcaaggatgtggatatacttgttcagaagaaaatactggtgaattgg |
110 |
Q |
| |
|
|||||| || ||||| || ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||| | |
|
|
| T |
2964844 |
tgagtcatatattactgactatgttgctgttttggattaccttataaatactggcaaggatgtggatatacttgttcagaacaaaatactggaaaatatg |
2964943 |
T |
|
| Q |
111 |
cttggggataatgattctgtggctaacttgtttaatagtctttggaaaaatgttacacatttgaatttcagttctcagtactctattctatgtgaagact |
210 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||| |||||| ||| |||||| ||||| ||| ||||| ||| | ||||||||| || |||| | |
|
|
| T |
2964944 |
cttggagatagtgattctgtggctaacttgtttaatggtctttccaaatatgttatacattctaatatcagtcttcaattctctattctttgcaaagatt |
2965043 |
T |
|
| Q |
211 |
tgaatggtttttgt |
224 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
2965044 |
tgaatgctttttgt |
2965057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 27 - 347
Target Start/End: Original strand, 2952284 - 2952607
Alignment:
| Q |
27 |
gattatgttgctgttttggatttccttattaatactggcaaggatgtggatatacttgttcagaagaaaatactggtgaattggcttgggga---taatg |
123 |
Q |
| |
|
|||||||||| ||||||||||| | |||| |||||||| | ||||||||||||||||||| || | | ||||| | ||| |||||| || || || |
|
|
| T |
2952284 |
gattatgttgttgttttggattacattataaatactggtaccgatgtggatatacttgttcggagggatatactagataatatgcttggagaaagtagtg |
2952383 |
T |
|
| Q |
124 |
attctgtggctaacttgtttaatagtctttggaaaaatgttacacatttgaatttcagttctcagtactctattctatgtgaagacttgaatggtttttg |
223 |
Q |
| |
|
|||||||||||||| ||||||| || |||| ||||||||| | ||| ||| |||||||||| | ||||||| | | |||| | |||| ||||| |
|
|
| T |
2952384 |
attctgtggctaacaggtttaatggtatttgcaaaaatgttgtatattctaatatcagttctcaattctctattattggcaaagaaataaatgcattttg |
2952483 |
T |
|
| Q |
224 |
tcatgatccttggcatagattgaaggcgactctcagacgtgattattgcaacagtccttggcaaactgctgcttccattgctggaattttactacttatt |
323 |
Q |
| |
|
| | |||||||| ||| ||||| || ||||| || ||||||||| |||| | ||||||||||||||||||||||||||||||||| |||| ||| | |
|
|
| T |
2952484 |
tagtaatccttggaataagttgaaagccactctgaggcgtgattatggcaaaactccttggcaaactgctgcttccattgctggaatcgtactccttgct |
2952583 |
T |
|
| Q |
324 |
ctctctttacttcaatcagtttgt |
347 |
Q |
| |
|
||| ||||||||||| |||||||| |
|
|
| T |
2952584 |
ctcactttacttcaaacagtttgt |
2952607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 27 - 368
Target Start/End: Original strand, 2983217 - 2983558
Alignment:
| Q |
27 |
gattatgttgctgttttggatttccttattaatactggcaaggatgtggatatacttgttcagaagaaaatactggtgaattggcttggggataatgatt |
126 |
Q |
| |
|
||||||||| ||||||||||| |||||| |||| ||| |||||||||||| ||||| |||||||| ||||||| | || | |||||| || | | | |
|
|
| T |
2983217 |
gattatgttcttgttttggattaccttataaataatggtaaggatgtggatgtacttattcagaagcaaatactagaaaacttgcttggagacggtcaat |
2983316 |
T |
|
| Q |
127 |
ctgtggctaacttgtttaatagtctttggaaaaatgttacacatttgaatttcagttctcagtactctattctatgtgaagacttgaatggtttttgtca |
226 |
Q |
| |
|
|| |||||| |||||||||| ||||||| ||||||||| | | | || |||||| ||| | | | ||| | | || ||| ||| ||||||| | |
|
|
| T |
2983317 |
ctatggctatcttgtttaatggtctttgcaaaaatgttgtaaaatctaaactcagttatcatttcgtaagtctttccaatgaattggatgctttttgtaa |
2983416 |
T |
|
| Q |
227 |
tgatccttggcatagattgaaggcgactctcagacgtgattattgcaacagtccttggcaaactgctgcttccattgctggaattttactacttattctc |
326 |
Q |
| |
|
| ||||| || ||| |||||||| |||||||| ||||||||| |||| | ||||||| ||| |||||||||| |||||||| | ||||||||| ||||| |
|
|
| T |
2983417 |
taatcctaggaataagttgaaggccactctcaggcgtgattatggcaatactccttggaaaattgctgcttccgttgctggagtcttactacttgttctc |
2983516 |
T |
|
| Q |
327 |
tctttacttcaatcagtttgtgcagtgttgcaagttgtacaa |
368 |
Q |
| |
|
|| || ||||| |||||||| | || |||||| | |||||| |
|
|
| T |
2983517 |
actataattcaaacagtttgttctgtcttgcaaatagtacaa |
2983558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 413 - 468
Target Start/End: Complemental strand, 2658793 - 2658738
Alignment:
| Q |
413 |
gttgaggattggactgaaattttgtttcggaatatggttgctttggagcaatgtca |
468 |
Q |
| |
|
||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2658793 |
gttgacgataggactgaaattttgtttcgaaatatggttgctttggagcaatgtca |
2658738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 261 - 347
Target Start/End: Original strand, 2965112 - 2965198
Alignment:
| Q |
261 |
cgtgattattgcaacagtccttggcaaactgctgcttccattgctggaattttactacttattctctctttacttcaatcagtttgt |
347 |
Q |
| |
|
|||||||| |||| | |||||||||| ||||||||||| |||||||||| ||||||||| ||||| ||||| ||||| |||||||| |
|
|
| T |
2965112 |
cgtgattactgcagtactccttggcaagctgctgcttcctttgctggaatcttactacttgttctcactttaattcaaacagtttgt |
2965198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 252 - 369
Target Start/End: Complemental strand, 2658475 - 2658358
Alignment:
| Q |
252 |
actctcagacgtgattattgcaacagtccttggcaaactgctgcttccattgctggaattttactacttattctctctttacttcaatcagtttgtgcag |
351 |
Q |
| |
|
||||| || ||||||||||||| | ||||||| || ||| ||||||| |||||||||| ||||||||||||||| || || ||||| |||||||| | | |
|
|
| T |
2658475 |
actctgaggcgtgattattgcagtactccttggaaagctggtgcttcctttgctggaatcttactacttattctcactataattcaaacagtttgttctg |
2658376 |
T |
|
| Q |
352 |
tgttgcaagttgtacaac |
369 |
Q |
| |
|
| || ||||| ||||||| |
|
|
| T |
2658375 |
tctttcaagtagtacaac |
2658358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 412 - 468
Target Start/End: Original strand, 2937729 - 2937785
Alignment:
| Q |
412 |
agttgaggattggactgaaattttgtttcggaatatggttgctttggagcaatgtca |
468 |
Q |
| |
|
||||||||||| ||| |||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
2937729 |
agttgaggattcgaccgaaattttgttttggaatatggttgctttggagcagtgtca |
2937785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 423 - 468
Target Start/End: Original strand, 2974287 - 2974332
Alignment:
| Q |
423 |
ggactgaaattttgtttcggaatatggttgctttggagcaatgtca |
468 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2974287 |
ggaccgaaattttgtttcggaatatggttgctttggagcagtgtca |
2974332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 405 - 468
Target Start/End: Original strand, 2927422 - 2927485
Alignment:
| Q |
405 |
aattgaaagttgaggattggactgaaattttgtttcggaatatggttgctttggagcaatgtca |
468 |
Q |
| |
|
|||| |||||| |||||| |||||||| ||| || ||||||||||||||||||||||| ||||| |
|
|
| T |
2927422 |
aattaaaagttcaggattcgactgaaactttattacggaatatggttgctttggagcagtgtca |
2927485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 413 - 468
Target Start/End: Original strand, 2934869 - 2934924
Alignment:
| Q |
413 |
gttgaggattggactgaaattttgtttcggaatatggttgctttggagcaatgtca |
468 |
Q |
| |
|
||||| ||| |||||||||||| |||||| |||||||||||||||||||| ||||| |
|
|
| T |
2934869 |
gttgacgataggactgaaatttcgtttcgaaatatggttgctttggagcagtgtca |
2934924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 41 - 102
Target Start/End: Original strand, 2985693 - 2985754
Alignment:
| Q |
41 |
tttggatttccttattaatactggcaaggatgtggatatacttgttcagaagaaaatactgg |
102 |
Q |
| |
|
|||||||| |||||| |||||| | ||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
2985693 |
tttggattaccttataaatactagtaaggatgcggatatacttgttcagaaccaaatactgg |
2985754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 423 - 467
Target Start/End: Original strand, 2964789 - 2964833
Alignment:
| Q |
423 |
ggactgaaattttgtttcggaatatggttgctttggagcaatgtc |
467 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
2964789 |
ggaccgaaattatgtttcggaatatggttgctttggagcagtgtc |
2964833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 45 - 165
Target Start/End: Original strand, 2979257 - 2979377
Alignment:
| Q |
45 |
gatttccttattaatactggcaaggatgtggatatacttgttcagaagaaaatactggtgaattggcttggggataatgattctgtggctaacttgttta |
144 |
Q |
| |
|
|||| |||||| ||||| || | |||||||||||||||||||| || |||||||||| |||| |||||| || | | |||||| ||||| ||||||| |
|
|
| T |
2979257 |
gattaccttataaataccggtacggatgtggatatacttgttcggagcaaaatactggaaaatttgcttggagacagtcattctgctgctaaattgttta |
2979356 |
T |
|
| Q |
145 |
atagtctttggaaaaatgtta |
165 |
Q |
| |
|
|| |||||| ||||||||| |
|
|
| T |
2979357 |
atgatctttgcgaaaatgtta |
2979377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 428 - 468
Target Start/End: Original strand, 2983151 - 2983191
Alignment:
| Q |
428 |
gaaattttgtttcggaatatggttgctttggagcaatgtca |
468 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
2983151 |
gaaattttgtttcggaatatgattgctttggagcattgtca |
2983191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 468
Target Start/End: Complemental strand, 3003593 - 3003537
Alignment:
| Q |
412 |
agttgaggattggactgaaattttgtttcggaatatggttgctttggagcaatgtca |
468 |
Q |
| |
|
||||| ||||| ||| |||| ||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
3003593 |
agttgcggattcgaccgaaactttatttcggaatatggttgctttggagcagtgtca |
3003537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 468
Target Start/End: Original strand, 2952195 - 2952258
Alignment:
| Q |
405 |
aattgaaagttgaggattggactgaaattttgtttcggaatatggttgctttggagcaatgtca |
468 |
Q |
| |
|
|||| |||||| |||||| || |||| ||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
2952195 |
aattaaaagttcaggattcaaccgaaactttatttcggaatatggttgctttggagcagtgtca |
2952258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 462
Target Start/End: Complemental strand, 2997181 - 2997132
Alignment:
| Q |
413 |
gttgaggattggactgaaattttgtttcggaatatggttgctttggagca |
462 |
Q |
| |
|
||||||||| |||| ||| ||| |||||||||||||||||||||||||| |
|
|
| T |
2997181 |
gttgaggatcggaccgaagctttatttcggaatatggttgctttggagca |
2997132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 150; Significance: 4e-79; HSPs: 3)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 11 - 368
Target Start/End: Complemental strand, 34985 - 34628
Alignment:
| Q |
11 |
tgagtcctacattacggattatgttgctgttttggatttccttattaatactggcaaggatgtggatatacttgttcagaagaaaatactggtgaattgg |
110 |
Q |
| |
|
|||||| || ||||| |||||||||| |||||||||||||||||| |||||||| ||||||| |||||||||||||| ||| |||||||| |||| | |
|
|
| T |
34985 |
tgagtcatatattactgattatgttgttgttttggatttccttataaatactggtaaggatgcggatatacttgttcggaaagaaatactgactaatttg |
34886 |
T |
|
| Q |
111 |
cttggggataatgattctgtggctaacttgtttaatagtctttggaaaaatgttacacatttgaatttcagttctcagtactctattctatgtgaagact |
210 |
Q |
| |
|
||||| || | ||||||||||||||||||||||||| ||||||| |||||||||| |||| ||| |||||||||| | ||||||||| || || ||| |
|
|
| T |
34885 |
cttggagacagtgattctgtggctaacttgtttaatcgtctttgcaaaaatgttatacatcataatatcagttctcatttctctattctttgcaaaaact |
34786 |
T |
|
| Q |
211 |
tgaatggtttttgtcatgatccttggcatagattgaaggcgactctcagacgtgattattgcaacagtccttggcaaactgctgcttccattgctggaat |
310 |
Q |
| |
|
| |||| |||||| | |||||||| |||| |||||||| ||||||| ||||||||| |||| | |||||||||||||||||||||| |||||||||| |
|
|
| T |
34785 |
taaatgcattttgtagtaatccttggaataggttgaaggcttctctcaggcgtgattatggcaaaactccttggcaaactgctgcttccgttgctggaat |
34686 |
T |
|
| Q |
311 |
tttactacttattctctctttacttcaatcagtttgtgcagtgttgcaagttgtacaa |
368 |
Q |
| |
|
|||||||||| ||||| |||| ||||||||||||||| | || |||||||| |||||| |
|
|
| T |
34685 |
tttactacttgttctcactttgcttcaatcagtttgttctgtcttgcaagtagtacaa |
34628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 411 - 468
Target Start/End: Complemental strand, 35052 - 34995
Alignment:
| Q |
411 |
aagttgaggattggactgaaattttgtttcggaatatggttgctttggagcaatgtca |
468 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
35052 |
aagttgaggatgggaccgaaattttgtttcggaatatggttgctttggagcagtgtca |
34995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 28 - 146
Target Start/End: Complemental strand, 44657 - 44539
Alignment:
| Q |
28 |
attatgttgctgttttggatttccttattaatactggcaaggatgtggatatacttgttcagaagaaaatactggtgaattggcttggggataatgattc |
127 |
Q |
| |
|
||||||||||| ||||||||| |||||| |||||||| ||||||| ||||||| ||||| || |||||||||| |||| |||||| || | | ||| |
|
|
| T |
44657 |
attatgttgctattttggattaccttataaatactggtaaggatgcagatatacatgttcggagcaaaatactggaaaatttgcttggagacagtcatta |
44558 |
T |
|
| Q |
128 |
tgtggctaacttgtttaat |
146 |
Q |
| |
|
||||||||| ||||||||| |
|
|
| T |
44557 |
tgtggctaatttgtttaat |
44539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 27 - 367
Target Start/End: Original strand, 3339376 - 3339716
Alignment:
| Q |
27 |
gattatgttgctgttttggatttccttattaatactggcaaggatgtggatatacttgttcagaagaaaatactggtgaattggcttggggataatgatt |
126 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||| | | ||||||||||||||||||| ||| ||||||| | |||||||||| || | ||||| |
|
|
| T |
3339376 |
gattatgttgcttttttggatttccttataaatactagtatggatgtggatatacttgttaagagcgaaatactagaaaattggcttgcagacagtgatt |
3339475 |
T |
|
| Q |
127 |
ctgtggctaacttgtttaatagtctttggaaaaatgttacacatttgaatttcagttctcagtactctattctatgtgaagacttgaatggtttttgtca |
226 |
Q |
| |
|
|||||||||| ||||||||| ||||||| |||||||||| |||| | | | |||||||| | | ||| ||| | ||||||| |||| ||||||| | |
|
|
| T |
3339476 |
ctgtggctaaattgtttaatggtctttgcaaaaatgttatgcattctagtgtaagttctcatttccctactcttggcaaagacttaaatgatttttgtaa |
3339575 |
T |
|
| Q |
227 |
tgatccttggcatagattgaaggcgactctcagacgtgattattgcaacagtccttggcaaactgctgcttccattgctggaattttactacttattctc |
326 |
Q |
| |
|
||||||||||||| |||||||| |||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
3339576 |
gaatccttggcataggttgaaggccactctcaggcgtgattattgcaatactccttggcaaactgctgcttccattgctggaattgtactacttgttctc |
3339675 |
T |
|
| Q |
327 |
tctttacttcaatcagtttgtgcagtgttgcaagttgtaca |
367 |
Q |
| |
|
|||||||||||||||||||| | || |||||||| ||||| |
|
|
| T |
3339676 |
actttacttcaatcagtttgttctgtcttgcaagtagtaca |
3339716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 412 - 468
Target Start/End: Original strand, 3339294 - 3339350
Alignment:
| Q |
412 |
agttgaggattggactgaaattttgtttcggaatatggttgctttggagcaatgtca |
468 |
Q |
| |
|
|||||| ||| |||| ||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3339294 |
agttgacgatgggaccgaaattttgtttcggaatatggttgctttggagcagtgtca |
3339350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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