View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-tnk507-A19 (Length: 248)
Name: R108-tnk507-A19
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk507-A19 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 15275715 - 15275477
Alignment:
| Q |
1 |
tttccgagagcgttttttcctaacctgataactgagttggaaaccggcattggcagggt-atcaagaagtcccttgagagggatacggaccttgccaatg |
99 |
Q |
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| T |
15275715 |
tttccgagagcgttttttcctaacctgataactgagttggaaaccggcattggcagggttatcaagaagtcccttgagagggatacggaccttgccaatg |
15275616 |
T |
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| Q |
100 |
gtactgcatgggaggaattttgggaggaattttcgata-gagatgagtttgacttcaagagagagacgattatagtaagcgagagattcgttgacagcaa |
198 |
Q |
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| T |
15275615 |
gtactgcatgggaggaa------------ttttcgataggagatgagtttgacttcaagagagagacgattatagtaagcgagagattcgttgacagcga |
15275528 |
T |
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| Q |
199 |
acttgaccgggatgttcca-gtggggtttattccagcgtgacggtggatgt |
248 |
Q |
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| T |
15275527 |
acttgaccgggatgttccatgtggggtttcttccagcatgacggtggatgt |
15275477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 15264080 - 15263842
Alignment:
| Q |
1 |
tttccgagagcgttttttcctaacctgataactgagttggaaaccggcattggcagggt-atcaagaagtcccttgagagggatacggaccttgccaatg |
99 |
Q |
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| T |
15264080 |
tttcccagagcgttttttcctaacttgataactgaatggatgaccggcataggcagagttatcaagaagtcccaagagagggatacggaccttgccaatg |
15263981 |
T |
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| Q |
100 |
gtactgcatgggaggaattttgggaggaattttcgata-gagatgagtttgacttcaagagagagacgattatagtaagcgagagattcgttgacagcaa |
198 |
Q |
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| T |
15263980 |
gtactgcgtgggaggaa------------ttttcgataggaaatgagtttgatttcgagagagagacgattatggtagacgagagattccttgacggcga |
15263893 |
T |
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| Q |
199 |
acttgaccgggatgttcca-gtggggtttattccagcgtgacggtggatgt |
248 |
Q |
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| T |
15263892 |
acttgatggggatgttccatgtagcgtttcttctagcgtgacagtggatgt |
15263842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 234
Target Start/End: Complemental strand, 15251464 - 15251348
Alignment:
| Q |
120 |
tgggaggaattttcgatag-agatgagtttgacttcaagagagagacgattatagtaagcgagagattcgttgacagcaaacttgaccgggatgttcca- |
217 |
Q |
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| T |
15251464 |
tgggaggaattttcgacgggagaggagtttgacttcgagagagaggcaattctggttggcgagagattcattgacgatgaacttgacggggatgttccat |
15251365 |
T |
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| Q |
218 |
gtggggtttattccagc |
234 |
Q |
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| T |
15251364 |
gtggggtttcttccagc |
15251348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 14431289 - 14431343
Alignment:
| Q |
138 |
gagatgagtttgacttcaagagagagacgattatagtaagcgagagattcgttga |
192 |
Q |
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| T |
14431289 |
gagatgagtttgacctcgagagagagacgattctggttagcgagagaatcgttga |
14431343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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