View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-tnk507-A3 (Length: 409)
Name: R108-tnk507-A3
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk507-A3 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 7 - 327
Target Start/End: Original strand, 39935656 - 39935976
Alignment:
| Q |
7 |
aggaaataactggtttttaatatggattgtaaaataatctggatattttcaaaaaccgaaccatatatgattataaatcggttttgtaagcataaccggt |
106 |
Q |
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| T |
39935656 |
aggaaataactggtttttaatatggattgtaaaataatctggatattttcaaaaaccgaaccatatatgattataaatcgattttttaagcataatcggt |
39935755 |
T |
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| Q |
107 |
tatttatccataacaatatttatatctagtttcgtgaccggttcataataaaatatggtcgtggttatgaatccaaattcacataaatggtttataaatg |
206 |
Q |
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| T |
39935756 |
tatttatccataacaatatttatatctagtttcgtgaccagttcataataaaatatggtcatggttatgaatccaaattcacataaatggtttataaatg |
39935855 |
T |
|
| Q |
207 |
aatatggtttggttggtcaaaatatccgaccacgcatatcctataagcaaatgccactgcaaattccaactatgttgatgtcatacctacaatttcgaac |
306 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39935856 |
aatatggtttggttggtcaaaatatccgaccacgcacaccctataagcaaatgccaatgcaaattccaactatgttgatgtcatacctacaatttcgaac |
39935955 |
T |
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| Q |
307 |
aacggaaagttgtatttatta |
327 |
Q |
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| T |
39935956 |
aacggaaagttgtatttatta |
39935976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 324 - 382
Target Start/End: Original strand, 39935289 - 39935347
Alignment:
| Q |
324 |
attaatcaaatattctagaaaatcatagtttctattcatcattctagaaaacaagattc |
382 |
Q |
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| T |
39935289 |
attaatcaaatattctagaaaatcatagtttctattcatgattctagaaaacaagattc |
39935347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 191
Target Start/End: Original strand, 48437538 - 48437631
Alignment:
| Q |
98 |
ataaccggttatttatccataacaatatttatatctagtttcgtgaccggttcataataaaatatggtcgtggttatgaatccaaattcacata |
191 |
Q |
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| T |
48437538 |
ataaccgattatttatccataatcatatttatatccggtttcgtgactaatttatattaaaatacggtcatggttatggatccaaatccacata |
48437631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 143 - 238
Target Start/End: Complemental strand, 50338356 - 50338261
Alignment:
| Q |
143 |
accggttcataataaaatatggtcgtggttatgaatccaaattcacataaatggtttataaatgaatatggtttggttggtcaaaatatccgacca |
238 |
Q |
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| T |
50338356 |
accggtttacaataaaatatggttatggttaggaatccaaaactatataaattacttatatatggatatggtttggtcggtcaaaatatccgacca |
50338261 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 141 - 220
Target Start/End: Complemental strand, 29738222 - 29738143
Alignment:
| Q |
141 |
tgaccggttcataataaaatatggtcgtggttatgaatccaaattcacataaatggtttataaatgaatatggtttggtt |
220 |
Q |
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| T |
29738222 |
tgaccggtttataataagatatggtcctggttatgaatctaaattcacataagtggtttataaatggatatggtttggtt |
29738143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 143 - 238
Target Start/End: Complemental strand, 9685001 - 9684906
Alignment:
| Q |
143 |
accggttcataataaaatatggtcgtggttatgaatccaaattcacataaatggtttataaatgaatatggtttggttggtcaaaatatccgacca |
238 |
Q |
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| T |
9685001 |
accggtttacaataaaatatggtaatggttatgaatccaaaaccatataagagatttatatatgtatatggttttgtaggtcaaaatatccgacca |
9684906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 238
Target Start/End: Original strand, 7544725 - 7544803
Alignment:
| Q |
161 |
atggtcgtggttatgaatccaaattcacataaatggtttataaat-gaatatggtttggttggtcaaaatatccgacca |
238 |
Q |
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| T |
7544725 |
atggtcatggttatgaatccaaatccatataagtgatttataaatgggatattgtttggtcggtcagaatattcgacca |
7544803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 143 - 238
Target Start/End: Original strand, 31188072 - 31188167
Alignment:
| Q |
143 |
accggttcataataaaatatggtcgtggttatgaatccaaattcacataaatggtttataaatgaatatggtttggttggtcaaaatatccgacca |
238 |
Q |
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| T |
31188072 |
accggtttacaataaaatatggtcttggttaggaatccaaaaccatataagtggtttatatatggatatggtttggtcggtcaaaatatccaacca |
31188167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 143 - 238
Target Start/End: Original strand, 31199916 - 31200011
Alignment:
| Q |
143 |
accggttcataataaaatatggtcgtggttatgaatccaaattcacataaatggtttataaatgaatatggtttggttggtcaaaatatccgacca |
238 |
Q |
| |
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| T |
31199916 |
accggtttacaataaaatatggtcctggttaggaatccaaaaccatataagtggtttatatatggatatggtttggtcggtcaaaatatccaacca |
31200011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 7958896 - 7958809
Alignment:
| Q |
145 |
cggttcataataaaatatggtcgtggttatgaatccaaattcacataaatggtttataaatgaatatggtttggttggtcaaaatatc |
232 |
Q |
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| T |
7958896 |
cggtttataataaaatatggttatggttatgaatccaaatctatataagtgatttatatatggatatggtttggtcggtcaaaatatc |
7958809 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 187 - 238
Target Start/End: Original strand, 26428904 - 26428955
Alignment:
| Q |
187 |
acataaatggtttataaatgaatatggtttggttggtcaaaatatccgacca |
238 |
Q |
| |
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||||||||||||||||||| ||||| |||| |||||||||||||||||||| |
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| T |
26428904 |
acataaatggtttataaataaatatagtttaattggtcaaaatatccgacca |
26428955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 123 - 238
Target Start/End: Original strand, 16831737 - 16831852
Alignment:
| Q |
123 |
tatttatatctagtttcgtgaccggttcataataaaatatggtcgtggttatgaatccaaattcacataaatggtttataaatgaatatggtttggttgg |
222 |
Q |
| |
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| T |
16831737 |
tatttatatccaatttggtgaccagtttataataaaacatgattatggttagaaattcaaatctatataaataatttataaatgtatataatttgattgg |
16831836 |
T |
|
| Q |
223 |
tcaaaatatccgacca |
238 |
Q |
| |
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|||||||||||||||| |
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|
| T |
16831837 |
tcaaaatatccgacca |
16831852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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