View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-tnk507-A38 (Length: 257)
Name: R108-tnk507-A38
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk507-A38 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 52899010 - 52899267
Alignment:
| Q |
1 |
gttttgtgcctgtgtca-aaaagtgtaggtaaggttttttgttatgcctgcattcttcgtgtaatatatttttgctctaaggcatttatttgtatga-aa |
98 |
Q |
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| T |
52899010 |
gttttgtgcctgtgtcagaaaagtgtaggtaaggttttttgttatgcctgcattcttcgtgtaatatatttttgctctaaggcatttatttgtatgataa |
52899109 |
T |
|
| Q |
99 |
ctgaataatgaaattacaggttgccataaagacattgattgtggtccataggatattgagagagggtgatcttagct-caaagaagatcttgtaaactac |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
52899110 |
ctgaataatgaaattacaggttgccataaagacattgattgtggtccataggatattgagagagggtgatcttagcttcaaagaagatcttgtaaactac |
52899209 |
T |
|
| Q |
198 |
tcacacagagtacggtttctccgaatttccaacttcaaagatgactcaagccctctag |
255 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52899210 |
tcacacagagtacggtttctccgaatttccaacttcaaagatgactcaagccctctag |
52899267 |
T |
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