View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-tnk507-A45 (Length: 574)
Name: R108-tnk507-A45
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk507-A45 |
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Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 156 - 536
Target Start/End: Complemental strand, 35773471 - 35773088
Alignment:
| Q |
156 |
ctttccaatttctttgatataagtgaccttgattgaagcagttgatcataatcttgaatagtattttgagcactcgcaaatttgacatcaaccccttcaa |
255 |
Q |
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| T |
35773471 |
ctttccaatttctttgatataagtgaccttgattgaagcagttgatcataatcttgaatagtattttgagcactcgcaaatttgacatcaaccccttcaa |
35773372 |
T |
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| Q |
256 |
tgaaagttcttaacttgcaaataacatgatgaagcctaatagggatttgattttcaaattggccaagttgttccaaaatttgatggaacttttgcttcac |
355 |
Q |
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| T |
35773371 |
tgaaagttcttaacttgcaaatgacatgatgaagcctaatagggatttgatttgcaaattggccaagttgttccaaaatttgatggaacttttgcttcac |
35773272 |
T |
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| Q |
356 |
ttcatcgtctgaagagagcatttcaagtggtgtctccaaaagggtttctaaattttcaaaaatagctgcaacatttgaagctgggagcactgaaacagtt |
455 |
Q |
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| T |
35773271 |
ttcatcgtctgaagagagaatttcaagtggtgtctccaaaagggtttctaaattttcaaaaatagctgcaacatttgaagcttggagcactgaaacagtt |
35773172 |
T |
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| Q |
456 |
gttgagtcagtgcacataggagacaacttatanctatcatgt-acaaactttctagttcgg-aatcggatccc-agagtctgat |
536 |
Q |
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| T |
35773171 |
gttgagtcagtgcacataggagacaacttataactatcatgtaacaaactttctagttcggaaatcggatcccaagagtctgat |
35773088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 35773933 - 35773775
Alignment:
| Q |
1 |
tctttctccttttgcatcgatggaatcgacaattacaatctaatatcaaaaataatcagatgttcattgtgaatttgaatccacagaggtgacaaaatta |
100 |
Q |
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| T |
35773933 |
tctttctccttttgcatcgatggaatcgacaattacaatctaatataaaaaataaccagatgttcattgtgaatttgaatccacagaggtgacaaaatta |
35773834 |
T |
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| Q |
101 |
ctaaatgttaatatatgcatgaattgatatatcaaattttattggcggaaaatgccttt |
159 |
Q |
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| T |
35773833 |
ctaaatgttaatatatgcatgaattgatatatcaaattttattggcggaaaatgccttt |
35773775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 35777148 - 35777097
Alignment:
| Q |
1 |
tctttctccttttgcatcgatggaatcgacaa-ttacaatctaatatcaaaa |
51 |
Q |
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| T |
35777148 |
tctttctccttttccattgatggaatcgacaatttacattctaatatcaaaa |
35777097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 251 - 300
Target Start/End: Original strand, 2634981 - 2635030
Alignment:
| Q |
251 |
ttcaatgaaagttcttaacttgcaaataacatgatgaagcctaataggga |
300 |
Q |
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| T |
2634981 |
ttcaatgaaagttcttaagttgcaaacaacatgatgtagcctaataggga |
2635030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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