View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-tnk507-A55 (Length: 342)
Name: R108-tnk507-A55
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk507-A55 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 129 - 318
Target Start/End: Complemental strand, 2562018 - 2561825
Alignment:
| Q |
129 |
attaattcctcatccattatggctaatataccattattcttactactcatggcaaaccacaagattaaaccacttatcaacaaactgcaccccatgatgg |
228 |
Q |
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| T |
2562018 |
attaattcctcatccattattgctaatataccattattcttactactcatggcaaaccacaagattaaaccacttatcaacaaactgcaccccatgatgg |
2561919 |
T |
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| Q |
229 |
ccctcttaagtcc----taagtactctacttgatatatattagctaaacatgcttgtatttataatcaattccaatatgataggaatttacaaa |
318 |
Q |
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| T |
2561918 |
ccctcttaagtcctaattaagtactctacttgatatatattagctaaacatgcttgtatttataatcaattccaatatgataggaatttacaaa |
2561825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 2561819 - 2561686
Alignment:
| Q |
1 |
atgtgtataagaaagatctatgaagtgtgtggaatgggagagtagtttacgtgtaccagtcattatggcactatatgcatatataacaattaaagtcaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2561819 |
atgtgtataagaaagatctatgaagtgtgtggaatgggagagtagtttacgtgtaccagtcattatggcactatatgcatatataacaattaaagtcaga |
2561720 |
T |
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| Q |
101 |
ataaacgagtcatgaagatgacatatccattaat |
134 |
Q |
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| T |
2561719 |
ataaacgagtcatgaagatgacatatccattaat |
2561686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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