View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-tnk507-A56 (Length: 643)
Name: R108-tnk507-A56
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk507-A56 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 38052621 - 38052912
Alignment:
| Q |
1 |
catagaacacttaaaactattaaaacaaccttacaaatgaaattctaatgaagtaaacatcaatattgaatgaaatttcacatcgatagtttcgaagatg |
100 |
Q |
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| T |
38052621 |
catagaacacttaaaactattaaaacaaccttacaaatgaaattctaatgaagtaaacatcaatattgaatgaaatttcacatcgatagtttcgaagatg |
38052720 |
T |
|
| Q |
101 |
tgcaaatacgaatagagaaccacgaattagaaaaatgaatgaaaactacaaactagg-aaccaaggataattgcgaagagaaccg-aaaccaattaagat |
198 |
Q |
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| T |
38052721 |
tgcaaatacgaatagagaaccacgaattagaaaaacgaatgagaactgcaaactaggaaaccaaggagaattacgaagagaactgcaaaccaattaagat |
38052820 |
T |
|
| Q |
199 |
ttgcaaactatacaactatgtagatgaaatgaatcgaagacgaactcaaaacgatcgaagacggagaaggaaggaaaaacataacgattaata |
291 |
Q |
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| T |
38052821 |
ttgcaaactatacaactatgtagatgaaatgaatcgaagacgaactc-aaacgatcgaagacggagaaggaaggaaaaacataacgattaata |
38052912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 285 - 567
Target Start/End: Original strand, 21523233 - 21523517
Alignment:
| Q |
285 |
attaatacttatcgtgtgcaatgttccacaagttagctagcctgtgatctttaaaatataaataaatgttccttagtagctaataacataaacgtttgaa |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21523233 |
attaatacttatcgtgtgcaatgttccacaagttagctagcctgtgatctttaaaatataaataaatgttccttagtagctaataacataaacgtttgaa |
21523332 |
T |
|
| Q |
385 |
actacataatatcacataactcatggttgaatttaaaaacttcatttcttacaggaagttacaattggcgtcattttctangtttgacattttatgtcat |
484 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
21523333 |
actacataatatcacataactcatggttgaatttaaaaacttcatttcttacaggaagttacaattggcgtcattttctaagtttgacattttatgtcat |
21523432 |
T |
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| Q |
485 |
tagatcgtggccacacacncgtgcgtgcac-agagcaacatatatatgcaatgtgtgaagagcatggac-ttacttgcganggtt |
567 |
Q |
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||||||||| | |||||| |||||| |||| |||||||||||||||||||||||||||||||||| ||| |||||||||| |||| |
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| T |
21523433 |
tagatcgtgtcaacacacacgtgcgcgcacaagagcaacatatatatgcaatgtgtgaagagcattgacattacttgcgatggtt |
21523517 |
T |
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