View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-tnk507-A67 (Length: 553)
Name: R108-tnk507-A67
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk507-A67 |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 6284591 - 6284287
Alignment:
| Q |
1 |
gtctgttcattatttagtttaagaaacaaaaagtgtaacaaggaagtgagggaggtaagttcttattaaatgggttgtgcgattgtgtattttgagaaat |
100 |
Q |
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| T |
6284591 |
gtctgttcattaattagtttaagaaacaaaaagtgtaacaagggagggagggaggtaagttcttattaaatgggttgtgcgattgtgtattttgagaaat |
6284492 |
T |
|
| Q |
101 |
gcttaactaagaagaaaaacataagataatatataaagaaattctacacaatcaattaacataatgtaccgacaaaacgggctctacccgacccgcttcg |
200 |
Q |
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| T |
6284491 |
gcttaactaagaagaaaaacataagataatatataaagaaattttacacaatcaattaacataatgtaccgacaaaacgggctctacccgacccgcttcg |
6284392 |
T |
|
| Q |
201 |
ggttgatattaggtttaaattaaagttttatcaaaacaaactaaaaattctatttttctcaagaaaggtttttgtacttgtacgttgtaagtttggtgga |
300 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
6284391 |
ggttgatattagg-ttaaattaaagttttatcaaaacaaactaaaaatcctatttttctcaagaaaggtttttgtacacgtacgttgaaagtttggtgga |
6284293 |
T |
|
| Q |
301 |
ccagcc |
306 |
Q |
| |
|
|||||| |
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| T |
6284292 |
ccagcc |
6284287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 371 - 534
Target Start/End: Complemental strand, 6284221 - 6284063
Alignment:
| Q |
371 |
cttgcaaatattatccacatcaattctccaacaagtttcttacaa-tgtggnctggcatattatactattatataaaattttaaacaattatagatttcc |
469 |
Q |
| |
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||||||||||||||||||||| ||||||||||||| ||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
6284221 |
cttgcaaatattatccacatc-----tccaacaagtttcctacaaatgtgatctggcacattatactattatataaaattttaaacaattatagatttta |
6284127 |
T |
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| Q |
470 |
aattngtncaaaacaacttctaaattct-cnacatctcaaacctcgaatattttangggttttatt |
534 |
Q |
| |
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|||| || ||||||||||| |||||||| | |||||||||||||||||||||||| |||||||||| |
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| T |
6284126 |
aatt-gttcaaaacaacttttaaattctccaacatctcaaacctcgaatatttta-gggttttatt |
6284063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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