View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: R108-tnk507-A68 (Length: 370)
Name: R108-tnk507-A68
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk507-A68 |
 | |
|
| [»] scaffold0062 (7 HSPs) |
| | |
|
Alignment Details
Target: scaffold0062 (Bit Score: 121; Significance: 6e-62; HSPs: 7)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 15093 - 15221
Alignment:
| Q |
1 |
attaagactttctcatttcaaaaggtggtcttccttacaatctcccatcgactcttgcaaatggtcctcgcaaatattacgcgtgttaatgtttgtcctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
15093 |
attaagactttctcatttcaaaaggtggtcttccttacaatctcccatcgactcttgcaaatggtcctcgcaaatattacacgtgttaatttttgtcctt |
15192 |
T |
|
| Q |
101 |
gaattgttttcgttttgttttagtccttg |
129 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
15193 |
gaattgttttcgttttgttttagtccttg |
15221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 3 - 129
Target Start/End: Original strand, 25261 - 25387
Alignment:
| Q |
3 |
taagactttctcatttcaaaaggtggtcttccttacaatctcccatcgactcttgcaaatggtcctcgcaaatattacgcgtgttaatgtttgtccttga |
102 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
25261 |
taagactttctcatttcaaaaggtggtattccttacaatctcccatcgactcttgcaaatggtcctcacaaatattacgcgtgttaatttttgtccttgc |
25360 |
T |
|
| Q |
103 |
attgttttcgttttgttttagtccttg |
129 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
25361 |
attgttttcgttttgttttagtccttg |
25387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 3 - 129
Target Start/End: Original strand, 35427 - 35553
Alignment:
| Q |
3 |
taagactttctcatttcaaaaggtggtcttccttacaatctcccatcgactcttgcaaatggtcctcgcaaatattacgcgtgttaatgtttgtccttga |
102 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
35427 |
taagactttctcatttcaaaaggtggtattccttacaatctcccatcgactcttgcaaatggtcctcacaaatattacgcgtgttaatttttgtccttgc |
35526 |
T |
|
| Q |
103 |
attgttttcgttttgttttagtccttg |
129 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
35527 |
attgttttcgttttgttttagtccttg |
35553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 221 - 360
Target Start/End: Original strand, 15310 - 15449
Alignment:
| Q |
221 |
ccaacacgcttgatggttgcatagaccatttggaaatttaaggctaacttatttgaggaaatgttcacactatataaaataattgaagaaatggngttat |
320 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| | ||||| |
|
|
| T |
15310 |
ccaacacgcttaatggttgcagagaccatttggaaatttaaggctaacttatttgaggaggtgttcacactatataaaataattgaagcaatagtgttat |
15409 |
T |
|
| Q |
321 |
aaaagggcaccaagagtttgtgataaattccaaccacaaa |
360 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
15410 |
aaaagggaagcaagagtttgtgataaattccaaccacaaa |
15449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 221 - 360
Target Start/End: Original strand, 25478 - 25617
Alignment:
| Q |
221 |
ccaacacgcttgatggttgcatagaccatttggaaatttaaggctaacttatttgaggaaatgttcacactatataaaataattgaagaaatggngttat |
320 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| | ||||| |
|
|
| T |
25478 |
ccaacacgcttaatggttgcagagaccatttggaaatttaaggctaacttatttgaggaggtgttcacactatataaaataattgaagcaatagtgttat |
25577 |
T |
|
| Q |
321 |
aaaagggcaccaagagtttgtgataaattccaaccacaaa |
360 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
25578 |
aaaagggaagcaagagtttgtgataaattccaaccacaaa |
25617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 221 - 360
Target Start/End: Original strand, 35644 - 35783
Alignment:
| Q |
221 |
ccaacacgcttgatggttgcatagaccatttggaaatttaaggctaacttatttgaggaaatgttcacactatataaaataattgaagaaatggngttat |
320 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| | ||||| |
|
|
| T |
35644 |
ccaacacgcttaatggttgcagagaccatttggaaatttaaggctaacttatttgaggaggtgttcacactatataaaataattgaagcaatagtgttat |
35743 |
T |
|
| Q |
321 |
aaaagggcaccaagagtttgtgataaattccaaccacaaa |
360 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
35744 |
aaaagggaagcaagagtttgtgataaattccaaccacaaa |
35783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 221 - 274
Target Start/End: Original strand, 8869 - 8922
Alignment:
| Q |
221 |
ccaacacgcttgatggttgcatagaccatttggaaatttaaggctaacttattt |
274 |
Q |
| |
|
||||||||||||||||||| | |||||||||| ||||||||| |||| |||||| |
|
|
| T |
8869 |
ccaacacgcttgatggttgtagagaccatttgcaaatttaagcctaatttattt |
8922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 16290 times since January 2019
Visitors: 3768