View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-tnk507-E09 (Length: 701)
Name: R108-tnk507-E09
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] R108-tnk507-E09 |
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[»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 139; Significance: 2e-72; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 92 - 297
Target Start/End: Original strand, 19329329 - 19329535
Alignment:
Q |
92 |
agcgagtacatggattggtatatgagaaatacccgaaagttcatagggaggcctatttctctgtcacccgggtttcggagaatggtaagaatatgtttca |
191 |
Q |
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T |
19329329 |
agcgagtacatggattggtatatgagaattacccgcaagttcatagggaggcctatttctctgtcatccgagtttcagagaacggtaaggatatgtttca |
19329428 |
T |
|
Q |
192 |
tgagtttaag-tttatatatcttgtagcaatcatagattaagtttgaaatgctttttatagaaaataaacaaatgcttgcagaatgttggtccgagagat |
290 |
Q |
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|||||| || |||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||| |
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T |
19329429 |
ggagttttagttttatatatcttgtagcaatgatagatgaagtttgaaatgcttttaatagaaaataaacaaatgcttgcagaatgctggtctgagagat |
19329528 |
T |
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Q |
291 |
atcgcac |
297 |
Q |
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T |
19329529 |
attgcac |
19329535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 101 - 198
Target Start/End: Original strand, 19467557 - 19467654
Alignment:
Q |
101 |
atggattggtatatgagaaatacccgaaagttcatagggaggcctatttctctgtcacccgggtttcggagaatggtaagaatatgtttcatgagttt |
198 |
Q |
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T |
19467557 |
atggattggtatgtgagaaatacgtgcaaattcatagggaggcctatttctccatcctccgagtttctgagaatggtaaggatatgtttcatgagttt |
19467654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 462 - 568
Target Start/End: Complemental strand, 23384643 - 23384535
Alignment:
Q |
462 |
aactatgaatgtggaaccagtcctaagcncaaaatttacatcataaantcnaaacnaaaacatgatcgtctatgaacc-cncctaacncncttctttgc- |
559 |
Q |
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T |
23384643 |
aactatgaatgtgaaacaagtcctaaacaccaaatttacatcataaaattaaaaaaaaaacatgatcgtctatgaaccacacctaacacacttctttgca |
23384544 |
T |
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Q |
560 |
agtagatga |
568 |
Q |
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||||||||| |
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T |
23384543 |
agtagatga |
23384535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 214 - 297
Target Start/End: Original strand, 19356372 - 19356455
Alignment:
Q |
214 |
gtagcaatcatagattaagtttgaaatgctttttatagaaaataaacaaatgcttgcagaatgttggtccgagagatatcgcac |
297 |
Q |
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T |
19356372 |
gtagcaatcatagatgaagtttgaaatgatttatatagaagatacacacatgcttgcagaatgctggtctgagaaatattgcac |
19356455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 19467437 - 19467524
Alignment:
Q |
4 |
ttatcctcaacatttggagcgacattttgaattgttggacttattttcacctaaatgtttcacgattgatttccatttgttcttagat |
91 |
Q |
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T |
19467437 |
ttatcctcagcactcggagcagcattttgcaatgttggagttactttcacctaaatgttgcacgattgatttccttttgttcttagat |
19467524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 462 - 568
Target Start/End: Complemental strand, 22097094 - 22096985
Alignment:
Q |
462 |
aactatgaatgtggaaccagtcctaagcncaaaatttacatcat-aaantcnaaacnaaaacatgatcgtctatgaacc-cncctaacncncttctttgc |
559 |
Q |
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T |
22097094 |
aactatgaatgtgaaacaagtcctaagcaccaaatttacatcataaaattcaaaacaaaaacatgaacgtctatgtaccacacttaacacacttctttgc |
22096995 |
T |
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Q |
560 |
-agtagatga |
568 |
Q |
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T |
22096994 |
aagtagatga |
22096985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 104; Significance: 2e-51; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 412 - 580
Target Start/End: Complemental strand, 185063 - 184892
Alignment:
Q |
412 |
caattgtaattgcgcgggcaagcatgaagccttccactaatctaagcacaaactatgaatgtggaaccagtcctaagcncaaaatttacatcataaa-nt |
510 |
Q |
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|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| | |
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T |
185063 |
caattgtaattgcgcgggcaagcatgaagccttctacttatctaagcacaaactatgaatgtgaaaccagtcctaagcacaaaatttacatcataaattt |
184964 |
T |
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Q |
511 |
cnaaacnaaaacatgatcgtctatgaacc-cncctaacncncttctttgc-agtagatgaaaccacgcnata |
580 |
Q |
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T |
184963 |
caaaacaaaaacatgatcgtctatgaaccacacctaacacacttctttgcaagtagatgagacaacgcaata |
184892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 104; Significance: 2e-51; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 412 - 580
Target Start/End: Complemental strand, 27353388 - 27353217
Alignment:
Q |
412 |
caattgtaattgcgcgggcaagcatgaagccttccactaatctaagcacaaactatgaatgtggaaccagtcctaagcncaaaatttacatcataaa-nt |
510 |
Q |
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|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| | |
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T |
27353388 |
caattgtaattgcgcgggcaagcatgaagccttctactgatctaagcacaaactatgaatgtgaaaccagtcctaagcacaaaatttacatcataaattt |
27353289 |
T |
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Q |
511 |
cnaaacnaaaacatgatcgtctatgaacc-cncctaacncncttctttgc-agtagatgaaaccacgcnata |
580 |
Q |
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T |
27353288 |
caaaacaaaaacatgatcgtctatgaaccacacctaacacacttctttgcaagtagatgagacaacgcaata |
27353217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 416 - 498
Target Start/End: Original strand, 36737766 - 36737848
Alignment:
Q |
416 |
tgtaattgcgcgggcaagcatgaagccttccactaatctaagcacaaactatgaatgtggaaccagtcctaagcncaaaattt |
498 |
Q |
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T |
36737766 |
tgtaaatgtgcgggcaagcatgaagttctccactaatccaagcacaaactatgaatgtgaaacaagtcctaagcacaagattt |
36737848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 6e-36; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 412 - 557
Target Start/End: Original strand, 24162125 - 24162271
Alignment:
Q |
412 |
caattgtaattgcgcgggcaagcatgaagccttccactaatctaagcacaaactatgaatgtggaaccagtcctaagcncaaaatttacatcataaantc |
511 |
Q |
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T |
24162125 |
caattgtaattgcgcgggcaaccatgaagtcttccactaatctaagcacaaactatgaatgtgaaacaagtcctaagcacaaaatttacatcacaaagtt |
24162224 |
T |
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Q |
512 |
naaacnaaaacatgatcgtctatgaacc-cncctaacncncttcttt |
557 |
Q |
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T |
24162225 |
caaatcacaacatgactgtctatgaaccacacctaacacacttcttt |
24162271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 422 - 537
Target Start/End: Complemental strand, 14478876 - 14478761
Alignment:
Q |
422 |
tgcgcgggcaagcatgaagccttccactaatctaagcacaaactatgaatgtggaaccagtcctaagcncaaaatttacatcat-aaantcnaaacnaaa |
520 |
Q |
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||||||||||||||||||| || | ||||| ||| |||| ||||||||||| ||| |||||||||| |||| |||||||||| ||| || |||| ||| |
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T |
14478876 |
tgcgcgggcaagcatgaagttctctattaatccaagtacaa-ctatgaatgtgaaacaagtcctaagcacaaagtttacatcataaaattcaaaacaaaa |
14478778 |
T |
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Q |
521 |
acatgatcgtctatgaa |
537 |
Q |
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T |
14478777 |
acatgatcgtctatgaa |
14478761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 432 - 539
Target Start/End: Complemental strand, 12188748 - 12188641
Alignment:
Q |
432 |
agcatgaagccttccactaatctaagcacaaactatgaatgtggaaccagtcctaagcncaaaatttacatcataaantcnaaacnaaaacatgatcgtc |
531 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||| ||| | ||| | ||||||| ||| |
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T |
12188748 |
agcatgaagtcttccactaatctaagcacaaactatgaatgtgaaacaagtcctaagcacaaaatttacatcacaaagttcaaatcacaacatgactgtc |
12188649 |
T |
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Q |
532 |
tatgaacc |
539 |
Q |
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|||||||| |
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T |
12188648 |
tatgaacc |
12188641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 425 - 500
Target Start/End: Original strand, 27952170 - 27952245
Alignment:
Q |
425 |
gcgggcaagcatgaagccttccactaatctaagcacaaactatgaatgtggaaccagtcctaagcncaaaatttac |
500 |
Q |
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|||||||||||||||| |||||| |||||||| ||||||||||||||||| ||| |||||||||| |||||||||| |
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T |
27952170 |
gcgggcaagcatgaagtcttccattaatctaaccacaaactatgaatgtgaaacaagtcctaagcacaaaatttac |
27952245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 441 - 557
Target Start/End: Original strand, 12695967 - 12696084
Alignment:
Q |
441 |
ccttccactaatctaagcacaaactatgaatgtggaaccagtcctaagcncaaaatttacatcataaantcnaaacnaaaacatgatcgtctatgaacc- |
539 |
Q |
|
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|||||||| |||||||||||||||||||||||| ||| |||||||||| |||||||||||||| ||| | ||| | ||||||| ||||||||||| |
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T |
12695967 |
ccttccacctatctaagcacaaactatgaatgtgaaacaagtcctaagcacaaaatttacatcacaaaattcaaatcacaacatgactgtctatgaacca |
12696066 |
T |
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Q |
540 |
cncctaacncncttcttt |
557 |
Q |
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T |
12696067 |
cacctaacacacttcttt |
12696084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 416 - 568
Target Start/End: Complemental strand, 29226587 - 29226432
Alignment:
Q |
416 |
tgtaattgcgcgggcaagcatgaagccttccactaatctaagcacaaactatgaatgtggaaccagtcctaagcncaaaatttacatcat-aaantcnaa |
514 |
Q |
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||||| |||| |||||||||||||| | |||||| ||||||||| |||||||||||||| || |||||||||| |||||| |||||| | ||| || || |
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T |
29226587 |
tgtaaatgcgtgggcaagcatgaagtcatccactcatctaagcataaactatgaatgtgaaataagtcctaagcacaaaatatacatcctaaaattcaaa |
29226488 |
T |
|
Q |
515 |
acnaaaacatgatcgtctatgaacc-cncctaacncncttctttgc-agtagatga |
568 |
Q |
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| |||||||| |||||||||| | |||||| | ||||||||| ||||||||| |
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|
T |
29226487 |
atataaacatgactatctatgaaccacacctaacacacttctttgcaagtagatga |
29226432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 416 - 568
Target Start/End: Complemental strand, 29339886 - 29339731
Alignment:
Q |
416 |
tgtaattgcgcgggcaagcatgaagccttccactaatctaagcacaaactatgaatgtggaaccagtcctaagcncaaaatttacatcat-aaantcnaa |
514 |
Q |
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||||| |||| |||||||||||||| | |||||| ||||||||| |||||||||||||| || |||||||||| |||||| |||||| | ||| || || |
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T |
29339886 |
tgtaaatgcgtgggcaagcatgaagtcatccactcatctaagcataaactatgaatgtgaaataagtcctaagcacaaaatatacatcctaaaattcaaa |
29339787 |
T |
|
Q |
515 |
acnaaaacatgatcgtctatgaacc-cncctaacncncttctttgc-agtagatga |
568 |
Q |
|
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| |||||||| |||||||||| | |||||| | ||||||||| ||||||||| |
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|
T |
29339786 |
atataaacatgactatctatgaaccacacctaacacacttctttgcaagtagatga |
29339731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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