View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-tnk507-E15 (Length: 456)
Name: R108-tnk507-E15
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk507-E15 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 115 - 456
Target Start/End: Original strand, 53694891 - 53695226
Alignment:
| Q |
115 |
tatatgtggaggtaagaatacagtttgagggggtatgagacgagaattttccatccttttctggagaatgccatatctgacccaaaccgcacagtccatt |
214 |
Q |
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| T |
53694891 |
tatatgtggaggtaagaatacagtttgagggggtatgagacgagaattttccatccttttctggagaatgccatatctgacccaaacagcacagtccatt |
53694990 |
T |
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| Q |
215 |
aggcattagcatagctgtccttcccatctcatcactgtgtagtgtacagtgagagtgcgtcagaaagaacctcttgtatttttaacatagaagtcaaaac |
314 |
Q |
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| T |
53694991 |
aggcattagcatagctgtccttcccatctcatcactgtgtag-----agtgagagtgcgtcagaaagaacctcttgtatttttaacatagaagtcaaaac |
53695085 |
T |
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| Q |
315 |
ctcttctccataaaacttcatctccaattttggtgagccattgtaacattcctttgcatgccacttaaatttcgtttttggagttatctttgctttaatc |
414 |
Q |
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| T |
53695086 |
ctcttctccataaaacttcatctccaattttggtgagtcattgtaacattcctttgcatgccacttaaatttcgtttttggagttatctttgctttaatc |
53695185 |
T |
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| Q |
415 |
acattcctttaattatgttgacatgttttaagggtttctatg |
456 |
Q |
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| T |
53695186 |
acattcctttaattatgtagacatgtttt-agggtttctatg |
53695226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 290 - 455
Target Start/End: Original strand, 53685746 - 53685913
Alignment:
| Q |
290 |
gtatttttaacatagaagtcaaaacctcttctccataaaacttcatctccaattttggtg---agccattgtaacattcctttgcatgccacttaaattt |
386 |
Q |
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| T |
53685746 |
gtatttttaacatagacgtcaaaacctcttctccataaaacttcatattcaattttggtggtgagtcagtgtaatattcctttgcatgccgctcaaattt |
53685845 |
T |
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| Q |
387 |
cgtttttggagttatctttgctttaatcacattcctttaattatgttgacatgttttaagggtttctat |
455 |
Q |
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| T |
53685846 |
cgattttggagttatctttgttttaatcacattcctttgattatgtagacatgtttt-agggtttctat |
53685913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 53695222 - 53695306
Alignment:
| Q |
1 |
ctatggatttaggtttctctgcttttgtttgtttcaatgttttgtattttctttggatcacaaaatctaactatattattgaatt |
85 |
Q |
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| T |
53695222 |
ctatggatttaggtttctctgcttttgtttgtttcaatgttttgtattttctttggatcacaaaatctaactatattattgaatt |
53695306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 6 - 85
Target Start/End: Original strand, 53685919 - 53685997
Alignment:
| Q |
6 |
gatttaggtttctctgcttttgtttgtttcaatgttttgtattttctttggatcacaaaatctaactatattattgaatt |
85 |
Q |
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| T |
53685919 |
gatttaggtttatctgcttttggttgtttcaatgttttgt-ctctctttggatcacaaaatctaactatatcattgaatt |
53685997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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