View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-tnk507-E26 (Length: 537)
Name: R108-tnk507-E26
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk507-E26 |
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Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 34000698 - 34000971
Alignment:
| Q |
1 |
gaaagcaccactttgaaaaagttcatgattattatctgctttgagttataggtagtggatcaaagatattttttaaaaattaatttactacac--acacc |
98 |
Q |
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| T |
34000698 |
gaaagcaccactttgaaaaaattcatgattattatctgcttttagttataggtagtggatcaaagatattttttaaaaattaatttactacacacacacc |
34000797 |
T |
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| Q |
99 |
atcaaatacttcgagttatactgttaggaaaaatactttgagttatagtttaacacattatctttaaatacaacctcttattagatttcaaatgatgtta |
198 |
Q |
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| T |
34000798 |
atcaaatacttcgagttatactgttaagaaaaatactttgagttatagtttaacacattatctttaaatataacatcttattagatttcaaatgatgtta |
34000897 |
T |
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| Q |
199 |
caattagatataccatcaaacaagataaaaaatactccattaatatatttaattgcatgcactgatctggatct |
272 |
Q |
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| T |
34000898 |
caattagatataccatcaaacaagataaaaaatactccattaatatatttaattgcatgcactgatcgggatct |
34000971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 354 - 482
Target Start/End: Original strand, 34001040 - 34001170
Alignment:
| Q |
354 |
aggtactctgatacgtttgtgtacatttgcaaatttccgcgtacaattacgtggaagtatcacgaattggtttgcgtgaaacaattcatgattctccgga |
453 |
Q |
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| T |
34001040 |
aggtactctgatacgtttgtgtacatttgcaaatttccgcgaacaattacgtggaagtatcacgaattggtttgcgtgaaacaattcgtgattctccata |
34001139 |
T |
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| Q |
454 |
agg-aattatg-ttcatatttcagttggtaa |
482 |
Q |
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| T |
34001140 |
gggtaattacgtttcatatttcagttggtaa |
34001170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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