View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: R108-tnk507-E31 (Length: 771)
Name: R108-tnk507-E31
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk507-E31 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 347 - 771
Target Start/End: Complemental strand, 12643462 - 12643038
Alignment:
| Q |
347 |
caattggttccttctacgagcagtatcatcatctccttgttgaaaaccatgttccataaattccaaatattgtgagcttttagatgagttgtcatcaaaa |
446 |
Q |
| |
|
|||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12643462 |
caattggtcccttctacgagtagtatcatcaactccttgttgaaaaccatgttccataaattccaaatattgtgagcttttagatgagttgtcatcaaaa |
12643363 |
T |
|
| Q |
447 |
gttcccaataactaaaatcttttgttccttacacactcaaactatatatatannnnnnngttttcccctcacattgtaggacctaacctgctgtgatatc |
546 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | | | ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12643362 |
gttcccaataactaaaatcttttgttccttacacactcaaactatttttttttttttttgttttcccctcacattgtaggacctaacctgctgtgatatc |
12643263 |
T |
|
| Q |
547 |
aatttgatatcagtaagacataaatcactcaaactcatacactaattatgtatctgggannnnnnnnnnnnnnnnnnnttttacaacaacactatatttt |
646 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
12643262 |
aatttgatatcagtaagacataaatcactcaaactcatacactaattatgtatctgggaaagaagagagaagaagagattttacaacaacactatatttt |
12643163 |
T |
|
| Q |
647 |
cattcacaaattgatttgcaatattgattcatgaaaggttattagcatagtcttttataggcttagttacttaatacttaagaaaagaaagtcttatatg |
746 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
12643162 |
cattcacaaattgatttgcaatattgattcatgaaaggttattagcatagtcttttataggcttagttacttaatacttaagaaaagcaagtcttatatg |
12643063 |
T |
|
| Q |
747 |
cttagaaagtaaacggcggtgctgc |
771 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
12643062 |
cttagaaagtaaacggcggtgctgc |
12643038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 12643042 - 12642681
Alignment:
| Q |
1 |
gctgcatcacggtgcttacaggatcatgagaccttaatgcctaagcaaaaaccttaatggctaaggataatacaacatttttctttggtccgaaaaacac |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
12643042 |
gctgcatcgcggtgcttacaggatcatgagaccttaatgcctaagcaaaaaccttaatggctaaggataatgcaacgtttttctttggtccgaaaaacac |
12642943 |
T |
|
| Q |
101 |
ttcctatgctcagtgccattctcaattcttctagatagtttggtttaatatccaaaagagaaggatgaagcctcatgttgccactaccatgatcgctagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12642942 |
ttcctatgctcagtgccattctcaattcttctagatagtttggtttaatatccaaaagagaaggatgaagcctcatgttgccactaccatgatcgctagt |
12642843 |
T |
|
| Q |
201 |
atcaaacaggtcaaattgctatcaa----------agaacacaagttatatggttgttctgaagttgtagatcagactatatgattttaagttgtgggct |
290 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
12642842 |
atcaaacaggtcaaattgctatcaaagaaggataaagaacacaagttatatgattgttctgaagctgtagatcagactatatgattttaagttgtgggct |
12642743 |
T |
|
| Q |
291 |
gcaaccgcagttgcagcagtaatatcagagattttgaagtttctatgacaacatcgcaattg |
352 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12642742 |
gcgaccgcagttgcagcagtaatatcagagattttgaagtttctatgacaacatcgcaattg |
12642681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 351 - 466
Target Start/End: Complemental strand, 24146482 - 24146366
Alignment:
| Q |
351 |
tggttccttctacgagcagtatcatcatctccttgttgaaaaccatgttccataaat-tccaaatattgtgagcttttagatgagttgtcatcaaaagtt |
449 |
Q |
| |
|
|||| ||||||||||||| |||||| |||||||||| |||||| || | ||| |||| || ||||||||||| ||||| |||||||||| || || |
|
|
| T |
24146482 |
tggtcccttctacgagcaagttcatcagctccttgttgtaaaccaaactcaacaaagctccatatgttgtgagctttaagatgtgttgtcatcataaatt |
24146383 |
T |
|
| Q |
450 |
cccaataactaaaatct |
466 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
24146382 |
cccaataactgaaatct |
24146366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 13987 times since January 2019
Visitors: 8375