View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: R108-tnk507-E33 (Length: 1366)
Name: R108-tnk507-E33
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk507-E33 |
 | |
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| [»] scaffold0094 (2 HSPs) |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 411; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 566
Target Start/End: Original strand, 31243393 - 31243958
Alignment:
| Q |
1 |
cttatttcgttcacaatcccagggatccttacatcttcaagaacccggctcacactgctaggatcaaaaactatgttcgacagctcttgactgttggtta |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31243393 |
cttatttcgttcacaatcccagggatccttacatcttcaagaacccggatcacactgctaggatcaaaaactatgcccgacagctcttgactgttggtta |
31243492 |
T |
|
| Q |
101 |
aaatactccacatcacatcaggattcaaaactaggcactgcagatccggtgtgcttagaaattctcttaaaaagtgaggattaatggaagcatgtattgg |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
31243493 |
aaatactccacatcacatcaggattcaaaactaggcactgcagatccggtgtgcttagaaattctcttaaaaagtgaggattaatggaagcatgtagtgg |
31243592 |
T |
|
| Q |
201 |
atggcagagctgcattggttcaaaatcttgaaatccttccccaagtaagccatccctctcaccatcagcatcaatgtccatatcgttggtcccatcattt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
31243593 |
atggcagagctgcattggttcaaaatctgaaaatccttccccaagtaagccatccctctcaccatcagcatcaatgtccatattgttggtcccatcattt |
31243692 |
T |
|
| Q |
301 |
gcatcggtgggtgcaaaacaacgaaccaaatagacagtatgatttggccccaaacctatagattacaaatgtaattcancatagttttgcaaaatagaaa |
400 |
Q |
| |
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| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||| |
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| T |
31243693 |
gtatcggtgggtgcataacaacgaaccaaatagacagtatgatttggccccaaacctatagattacaaatgtagttcaacatag-tttgcaaaatagaaa |
31243791 |
T |
|
| Q |
401 |
agtttaaatgtagtcaaatgttgcgtattaaagcatcaccctaatagacgaaagaataattcacaaaataggcgaagtactcaaatatggtttagcatta |
500 |
Q |
| |
|
||||||||||| || || ||||| |||||||||||||| ||||||||| |||||||||||||||||||||| ||||||| ||||||||| |||||||||| |
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| T |
31243792 |
agtttaaatgtggtgaagtgttgtgtattaaagcatca-cctaatagatgaaagaataattcacaaaatagacgaagtattcaaatatgttttagcatta |
31243890 |
T |
|
| Q |
501 |
cnat-aaaganatangcaangtggc-aatcgaanccanaaactaattaaaccattttaccttggaccc |
566 |
Q |
| |
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|| ||||| ||| ||| || | |||| || ||| |||||| ||||||||||||| |||| |||| |
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| T |
31243891 |
acataaaagatataaacaatgttccaaatcaaaaccagaaactagttaaaccattttatcttgtaccc |
31243958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 948 - 1366
Target Start/End: Original strand, 31242979 - 31243397
Alignment:
| Q |
948 |
tcaattgcaccaccattagtcacaatatggtaaatttttagttactccaagccttagaagcattacttagacataagcactgtactatttatagttacaa |
1047 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31242979 |
tcaattgcaccaccattagtcacaatatggtaaatttttagttactccaagccttagaagcattacttagacataagcactgtactatttatagttacaa |
31243078 |
T |
|
| Q |
1048 |
attactataataatcagacttaaaaatatattttttaaaaaacaaatttgttaacaagagatgtttattgtcgagtaaaaatattctagtgttagaactt |
1147 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
31243079 |
attactataataatcagacttaaaaatatattttttaaaaaacaaatttgttaacaagagatgtcaattgtcgagtaacaatattctagtgttagaactt |
31243178 |
T |
|
| Q |
1148 |
acatccagtaaaagaccaaggattgggaagtggagtagtatttggtaacgaagaaccagcatttgtttcactaccatttgactgatccctggcttggttt |
1247 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31243179 |
acatccagtaaaagaccagggattgggaagtggagtagtatttggtaacgaagaaccagcatttgtttcactaccatttgactgatccctggcttggttt |
31243278 |
T |
|
| Q |
1248 |
tcatagattcctgcagcgacattttcttctacaatgtcttcataaatgtacctcaactggtttaatcccccaggaatagattcaatgctgcccagttcga |
1347 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31243279 |
tcatagattcctgcagcgacattttcttctacaatgtcttcataaatgtacctcaactggtttaatcccccaggaatagattcaatgctgcccagttcga |
31243378 |
T |
|
| Q |
1348 |
ggtcagctagtctccttat |
1366 |
Q |
| |
|
||||||||||||||||||| |
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| T |
31243379 |
ggtcagctagtctccttat |
31243397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 831 - 953
Target Start/End: Original strand, 31244194 - 31244316
Alignment:
| Q |
831 |
ttaggaaattttctctttaagcatattcttttcatatatataccaaaaatggttcatgcatgcacaaccaaatttcccaacacctgcgacacagtcccat |
930 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31244194 |
ttagaaaattttctctttaagcatattcttttcatatatattacaaaaatggttcatgcatgcacaaccaaatttcccaacacctgcgacacagtcccat |
31244293 |
T |
|
| Q |
931 |
gcaaaattatggttaattcaatt |
953 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
31244294 |
gcaaaattatggttaattcaatt |
31244316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: scaffold0094
Description:
Target: scaffold0094; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 948 - 1206
Target Start/End: Original strand, 9690 - 9948
Alignment:
| Q |
948 |
tcaattgcaccaccattagtcacaatatggtaaatttttagttactccaagccttagaagcattacttagacataagcactgtactatttatagttacaa |
1047 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
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| T |
9690 |
tcaattacaacaccattagtcacaatatggtaaatttatagttactccaagccttagaagcattacttagacataagcaccgtactatttatagttacaa |
9789 |
T |
|
| Q |
1048 |
attactataataatcagacttaaaaatatattttttaaaaaacaaatttgttaacaagagatgtttattgtcgagtaaaaatattctagtgttagaactt |
1147 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||| |||||||||| |||||||| | |||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
9790 |
attactataataataagacttaaaaacatatttttttaaaaacaaataagttaacaaaatatgtcgattgtcgagtaacaatattctagtgttagaactt |
9889 |
T |
|
| Q |
1148 |
acatccagtaaaagaccaaggattgggaagtggagtagtatttggtaacgaagaaccag |
1206 |
Q |
| |
|
|| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9890 |
acttcctgtaaaagatcaaggattgggaagtggagtagtatttggtaacgaagaaccag |
9948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094; HSP #2
Raw Score: 165; E-Value: 1e-87
Query Start/End: Original strand, 948 - 1180
Target Start/End: Complemental strand, 10190 - 9958
Alignment:
| Q |
948 |
tcaattgcaccaccattagtcacaatatggtaaatttttagttactccaagccttagaagcattacttagacataagcactgtactatttatagttacaa |
1047 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
10190 |
tcaattacaacaccattagtcacaatatggtaaatttatagttactccaagccttagaagcattacttagacataagcattgtactatttatagttacaa |
10091 |
T |
|
| Q |
1048 |
attactataataatcagacttaaaaatatattttttaaaaaacaaatttgttaacaagagatgtttattgtcgagtaaaaatattctagtgttagaactt |
1147 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||| |||||| |||| ||||||||||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
10090 |
attactataataatcagacttaaaaagataattttaaaaaaagaaataagttaacaagagatgtcgattgtcgagtaacaatattctagtgttagaactt |
9991 |
T |
|
| Q |
1148 |
acatccagtaaaagaccaaggattgggaagtgg |
1180 |
Q |
| |
|
|| || |||||||| ||||||||||||||||| |
|
|
| T |
9990 |
acttcttgtaaaagagcaaggattgggaagtgg |
9958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 176; Significance: 4e-94; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 4e-94
Query Start/End: Original strand, 948 - 1195
Target Start/End: Original strand, 17214989 - 17215236
Alignment:
| Q |
948 |
tcaattgcaccaccattagtcacaatatggtaaatttttagttactccaagccttagaagcattacttagacataagcactgtactatttatagttacaa |
1047 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
17214989 |
tcaattacaacaccattagtcacaatatggtaaatttatagttattccaagccttagaagcattacttagacataagcaatgtattatttatagttacaa |
17215088 |
T |
|
| Q |
1048 |
attactataataatcagacttaaaaatatattttttaaaaaacaaatttgttaacaagagatgtttattgtcgagtaaaaatattctagtgttagaactt |
1147 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||| | |||||||||||| ||||||||||||||||||||| |
|
|
| T |
17215089 |
attactataataattagacttaaaaagatattttttaaaaaacaaataagttaacaagagatatcgattgtcgagtaacaatattctagtgttagaactt |
17215188 |
T |
|
| Q |
1148 |
acatccagtaaaagaccaaggattgggaagtggagtagtatttggtaa |
1195 |
Q |
| |
|
|| ||| |||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
17215189 |
acttcctgtaaaagaccaaggattggggagtggaggagtatttggtaa |
17215236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 153; E-Value: 2e-80
Query Start/End: Original strand, 948 - 1188
Target Start/End: Complemental strand, 17215510 - 17215270
Alignment:
| Q |
948 |
tcaattgcaccaccattagtcacaatatggtaaatttttagttactccaagccttagaagcattacttagacataagcactgtactatttatagttacaa |
1047 |
Q |
| |
|
|||||| || ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||| |
|
|
| T |
17215510 |
tcaattacaacaccattagtcacaatatgataaatttatagttactccaagccttagaagcattacttagatataaacactgtactatttatagtttcaa |
17215411 |
T |
|
| Q |
1048 |
attactataataatcagacttaaaaatatattttttaaaaaacaaatttgttaacaagagatgtttattgtcgagtaaaaatattctagtgttagaactt |
1147 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||| |||||||||| |||||||| |||||| ||| | || ||| ||||||||||||||||||||| |
|
|
| T |
17215410 |
attactataataattagacttaaaaatatagtttttgaaaaacaaataagttaacaacagatgtcgatttttgaataacaatattctagtgttagaactt |
17215311 |
T |
|
| Q |
1148 |
acatccagtaaaagaccaaggattgggaagtggagtagtat |
1188 |
Q |
| |
|
|| ||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
17215310 |
acttcctgtaaaagaccaaggattggggagtggagtagtat |
17215270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 142; Significance: 7e-74; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 7e-74
Query Start/End: Original strand, 1165 - 1366
Target Start/End: Original strand, 7206452 - 7206653
Alignment:
| Q |
1165 |
aaggattgggaagtggagtagtatttggtaacgaagaaccagcatttgtttcactaccatttgactgatccctggcttggttttcatagattcctgcagc |
1264 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
7206452 |
aaggattgggaagtggagtagtatttggtaaggaagaaccagcatttgtttcactactagttgactgatccctggcttggctgtcatagattcctgcagc |
7206551 |
T |
|
| Q |
1265 |
gacattttcttctacaatgtcttcataaatgtacctcaactggtttaatcccccaggaatagattcaatgctgcccagttcgaggtcagctagtctcctt |
1364 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| ||| ||||||| ||||||||||| || | ||| |||||||||||| |||||||||||| |
|
|
| T |
7206552 |
gacattttcttctacaatatcttcataaatgtacctcaacgagttgaatcccctaggaatagatttaacgatgctcagttcgaggtccgctagtctcctt |
7206651 |
T |
|
| Q |
1365 |
at |
1366 |
Q |
| |
|
|| |
|
|
| T |
7206652 |
at |
7206653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 1e-26
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 7206649 - 7206739
Alignment:
| Q |
1 |
cttatttcgttcacaatcccagggatccttacatcttcaagaacccggctcacactgctaggatcaaaaactatgttcgacagctcttgac |
91 |
Q |
| |
|
|||||||| | ||| ||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
7206649 |
cttatttcatgcacgatcccagggatccttgcatcttcacgaacccggctcacactgttaggatcaaaaactatgctcgacagctcttgac |
7206739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 252
Target Start/End: Original strand, 7206789 - 7206843
Alignment:
| Q |
198 |
tggatggcagagctgcattggttcaaaatcttgaaatccttccccaagtaagcca |
252 |
Q |
| |
|
|||||| ||| |||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
7206789 |
tggatgacagcgctgcattggttcaaaatctggaaatccttccccaactaagcca |
7206843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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