View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-tnk507-E35 (Length: 644)
Name: R108-tnk507-E35
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk507-E35 |
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Alignment Details
Target: chr5 (Bit Score: 370; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 507
Target Start/End: Complemental strand, 31761425 - 31760914
Alignment:
| Q |
1 |
gtcgtatcatgcgccgatattttagctatagctgctcgagactctgttgccattgtaagtctttcaaatatttttcacttctaaacaaggttttaatttg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31761425 |
gtcgtatcatgcgccgatattttagctatagctgctcgagactctgttgccattgtaagtctttcaaatatttttcacttctaaacaaggttttaatttg |
31761326 |
T |
|
| Q |
101 |
tgtaaccacggttgtttcagaaaatataaaagattttaaggtctata----accgcaattttgaatacatagactgcatttaaccgcgatcaaaactgaa |
196 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31761325 |
tgtaaccacagttgtttcagaaaatataaaagattttgaggtctatatataaccgcaattttgaatacatagactgcatttaaccg-gatcaaaactgaa |
31761227 |
T |
|
| Q |
197 |
atttcgactactatannnnnnnnattggtaaatttggagtagtatatataaccctagaaactaagaaattttgctttcatcaattaacagctgggtggta |
296 |
Q |
| |
|
||||||| || |||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31761226 |
atttcgagtagtatattttttttattggtgaatttggagtagtatatataaccctagcaactaagaaattttgctttcatcatttaacagctgggtggta |
31761127 |
T |
|
| Q |
297 |
agcaatattggtaccaagtgttactaggaagaagagattcaagatttgcaagcagggatgcagcaaatacnaatcttcctcctccatttttcaatttctc |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
31761126 |
agcaatattggtaccaagtgttactaggaagaagagattcaagatttgcaagcagggatgcagcaaatacaaatcttcctcctccatttttcaatttctc |
31761027 |
T |
|
| Q |
397 |
acanctcatcacaaatttcaggtcgcatggactaanccttaaggacttagttggtctctctggnggccac-caattgga-tttcccaatgcnctaacttt |
494 |
Q |
| |
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||| |||||||||||||||| ||| |||||||| | |||||| |||||||||| ||| ||||| |||||| |||||||| ||||| ||||| |||||||| |
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| T |
31761026 |
acaactcatcacaaatttcaagtctcatggacttaaccttaaagacttagttgttctatctggtggccacacaattggattttccaaatgcactaacttt |
31760927 |
T |
|
| Q |
495 |
agggacnggatct |
507 |
Q |
| |
|
|| ||| |||||| |
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|
| T |
31760926 |
agagacaggatct |
31760914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 227 - 496
Target Start/End: Original strand, 31749520 - 31749791
Alignment:
| Q |
227 |
aatttggagtagtatatataaccctagaaactaagaaattttgctttcatcaattaacagctgggtggtaagcaatattggtaccaagtgttactaggaa |
326 |
Q |
| |
|
||||| || |||| ||| |||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31749520 |
aatttcgaatagtgtatgtaacactagcaactaagaaattttgctttcatcatttaacagctgggtggtaagcaatattggtaccaagtgttactaggaa |
31749619 |
T |
|
| Q |
327 |
gaagagattcaagatttgcaagcagggatgcagcaaatacnaatcttcctcctccatttttcaatttctcacanctcatcacaaatttcaggtcgcatgg |
426 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| || || |||||||| ||||||| |||||||| ||| ||||| |
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| T |
31749620 |
gaagagattcaagatttgcaagcagagatgcagcaaatacaaatcttcctcctccattctttaacttctcacaactcatcaaaaatttcaagtcacatgg |
31749719 |
T |
|
| Q |
427 |
actaanccttaaggacttagttggtctctctggnggccac-caattgga-tttcccaatgcnctaactttag |
496 |
Q |
| |
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||||| ||||||||||||||||| ||| ||||| || ||| |||||||| ||||| ||||| |||||||||| |
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|
| T |
31749720 |
actaaaccttaaggacttagttgttctatctggtggacacacaattggattttccaaatgcactaactttag |
31749791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 276 - 496
Target Start/End: Complemental strand, 31767900 - 31767678
Alignment:
| Q |
276 |
tcaattaacagctgggtggtaagcaatattggtaccaagtgttactaggaagaagagattcaagatttgcaagcagggatgcagcaaatacnaatcttcc |
375 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
31767900 |
tcaattaacagttgggtggtaagcaatattggtaccaagtgttactaggaagaagagattcaagatttgcaagcagggatgcagcaaatacaaatcttcc |
31767801 |
T |
|
| Q |
376 |
tcctccatttttcaatttctcacanctcatcacaaatttcaggtcgcatggactaanccttaaggacttagttggtctctctggnggccac-caattgga |
474 |
Q |
| |
|
||||||||| || || |||||||| |||||||||||||||| ||| |||||||||| |||||| || ||||||| ||| ||||| || ||| |||||||| |
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| T |
31767800 |
tcctccattctttaacttctcacaactcatcacaaatttcaagtcacatggactaaaccttaaagatttagttgttctatctggtggtcacacaattgga |
31767701 |
T |
|
| Q |
475 |
-tttcccaatgcnctaactttag |
496 |
Q |
| |
|
||||| ||||| |||||||||| |
|
|
| T |
31767700 |
ttttccaaatgcactaactttag |
31767678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 274 - 477
Target Start/End: Complemental strand, 31753537 - 31753333
Alignment:
| Q |
274 |
catcaattaacagctgggtggtaagcaatattggtaccaagtgttactaggaagaagagattcaagatttgcaagcagggatgcagcaaatacnaatctt |
373 |
Q |
| |
|
||||||||||||| |||| ||| | |||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||| |||||| |
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|
| T |
31753537 |
catcaattaacagttgggcggtcacaaatattggtaccaagtgttactgggcagaagagattcaagatttgcaagcagagatgcagcaaatataaatctt |
31753438 |
T |
|
| Q |
374 |
cctcctccatttttcaatttctcacanctcatcacaaatttcaggtcgcatggactaanccttaaggacttagttggtctctctggnggccac-caattg |
472 |
Q |
| |
|
|| || ||||||| || |||||||| |||||| ||||||| ||| || ||||||| |||||| |||||||||| ||| ||||| || ||| |||||| |
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| T |
31753437 |
ccaccggcattttttaacttctcacaactcatcgcaaattttcagtctcaaggactaaaccttaaagacttagttgttctatctggtggtcacacaattg |
31753338 |
T |
|
| Q |
473 |
gattt |
477 |
Q |
| |
|
||||| |
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|
| T |
31753337 |
gattt |
31753333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 4 - 190
Target Start/End: Original strand, 31749266 - 31749463
Alignment:
| Q |
4 |
gtatcatgcgccgatattttagctatagctgctcgagactctgttgccattgtaagtctttcaaatatttttcacttctaaacaaggttttaatttgtgt |
103 |
Q |
| |
|
|||||||| || ||||||||||||||||| |||||||| || |||||||| ||||||||||| |||||||| ||||||||||||||||||||| ||| | |
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|
| T |
31749266 |
gtatcatgtgcagatattttagctatagcagctcgagattccgttgccatagtaagtctttccaatattttgcacttctaaacaaggttttaaattgcat |
31749365 |
T |
|
| Q |
104 |
aaccac----ggttgtttcaga-------aaatataaaagattttaaggtctataaccgcaattttgaatacatagactgcatttaaccgcgatcaaa |
190 |
Q |
| |
|
|||||| ||||| |||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
31749366 |
aaccacaatatattgttgcagacttgcagcaatataaaagattttgaggtctataaccgcaattttgaatacatcgactgcatttaaccgcgatcaaa |
31749463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 31768261 - 31768182
Alignment:
| Q |
1 |
gtcgtatcatgcgccgatattttagctatagctgctcgagactctgttgccattgtaagtctttcaaatatttttcactt |
80 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||| |
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|
| T |
31768261 |
gtcgtatcatgtgccgatattttagctatagcagctcgagactctgttgccattgtaagtctttccaatattttgcactt |
31768182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 31753945 - 31753879
Alignment:
| Q |
5 |
tatcatgcgccgatattttagctatagctgctcgagactctgttgccattgtaagtctttcaaatat |
71 |
Q |
| |
|
||||||| || ||||| ||||||||||| |||||||| ||||||||||| |||||| |||| ||||| |
|
|
| T |
31753945 |
tatcatgtgcagatatcttagctatagcagctcgagattctgttgccatagtaagtatttccaatat |
31753879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 302 - 340
Target Start/End: Original strand, 27887869 - 27887907
Alignment:
| Q |
302 |
tattggtaccaagtgttactaggaagaagagattcaaga |
340 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||| |
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|
| T |
27887869 |
tattggtaccaagtgctactaggaagaagagatgcaaga |
27887907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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