View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-tnk507-E56 (Length: 588)
Name: R108-tnk507-E56
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk507-E56 |
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Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 51 - 503
Target Start/End: Original strand, 15396900 - 15397354
Alignment:
| Q |
51 |
attaagaaataaatttactataagggagagagaaaatgcaacttgtaggaggatgtgaaatcatctaaaggagatatagaaaaatacattgaaaatttgc |
150 |
Q |
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| T |
15396900 |
attaagaaataaatttactataagggagagagaaaatgcaacttgtaggaggatatgaaatcatctaaaggagatatagaaaaatacattgaaaatttgc |
15396999 |
T |
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| Q |
151 |
aaaataggaactaatcattgcgacattaaaaagggcctttcctaatt-ctttacattgaagggtctaagaactactaacttcgtccctaaatataggact |
249 |
Q |
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| T |
15397000 |
aatataggaactaatcattgcgacattaaaaagggcctttcctaatttctttacattgaagggtctaagaactactaacttcgtccctaaatataggact |
15397099 |
T |
|
| Q |
250 |
cgttgaccaaatcacgggaactaacaaagttgttagtaacatcaaatttgttgacaactagtattgttttgcaagtttacccttgaggagacataattag |
349 |
Q |
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|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
15397100 |
cgttgaccaaatcacgggaactaagaaagttgttagtgacatcaaatttgttgacaactagtactgttttgcaagtttacccttgaggagacataattag |
15397199 |
T |
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| Q |
350 |
nttatgtttccatcatagtatttagtacaggttgcacaaaaagtgtaacataattaggggtatagngggtacagaaataat-atgcagctgaatgaagnc |
448 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||| | |
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| T |
15397200 |
tttatgtttcaatcatagtatttagtacaggttgcacaaaaagtgtaacataattaggggtatagt-ggtacagaaataataatgtagctgaatgaaggc |
15397298 |
T |
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| Q |
449 |
ttacntattgnc-accatatgcagtttatcatcaaccagcaaatgaaggcttactt |
503 |
Q |
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| T |
15397299 |
ttacatgttgtcaacaatatgcagtttatcatcaaccagcaaatgaaggcttactt |
15397354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 74 - 441
Target Start/End: Original strand, 15388352 - 15388720
Alignment:
| Q |
74 |
gggagagagaaaatgcaacttgtaggaggatgtgaaatcatctaaaggagatatagaaaaatacattgaaaatttgcaaaataggaactaatcattgcga |
173 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||| |||||||| ||| |
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| T |
15388352 |
gggagagagaaaatgcaacttgtaggaggatatgaaatcatctaaaggacatagagaaaaatacattgaaaatttgcaacataggaattaatcattacga |
15388451 |
T |
|
| Q |
174 |
cattaaaaagggcctttcctaatt-ctttacattgaagggtctaagaactactaacttcgtccctaaatataggactcgttgaccaaatcacgggaacta |
272 |
Q |
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|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||| || |
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| T |
15388452 |
cattaaaaagggcctttcctaatttctttacatcgaagggtctaagaactactaactttgtccctaaatacagggctcgttgaccaaatcacgggaaata |
15388551 |
T |
|
| Q |
273 |
acaaagttgttagtaacatcaaatttgttgacaactagtattgttttgcaagtttacccttgaggagacataattagnttatgtttccatcatagtattt |
372 |
Q |
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| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||| |
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| T |
15388552 |
agaaagttgttagtaatatcagatttgttgacaactagtattgttttgcaagtttacctttgaggagacataattagtttatgtttctatcatagtattt |
15388651 |
T |
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| Q |
373 |
agtacaggttgcacaaaaagtgtaacataattaggggtatagngggtacagaaataat-atgcagctgaa |
441 |
Q |
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| T |
15388652 |
agtacaggttgcagaaaaagtgcaacagacttaggggtata-ttggtacagaaatgataatgcagctgaa |
15388720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 501
Target Start/End: Original strand, 15388822 - 15388859
Alignment:
| Q |
464 |
atatgcagtttatcatcaaccagcaaatgaaggcttac |
501 |
Q |
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| T |
15388822 |
atatgcagtttatcattaaccagcaaatgaacgcttac |
15388859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 413
Target Start/End: Complemental strand, 36034789 - 36034670
Alignment:
| Q |
294 |
aatttgttgacaactagtattgttttgcaagtttacccttgaggagacataattagnttatgtttccatcatagtatttagtacaggttgcacaaaaag- |
392 |
Q |
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||||||||||||| | ||||||||| ||||||||||||| | |||| | ||||| |||| ||| ||||||||| ||| || |||||| | |||||| |
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| T |
36034789 |
aatttgttgacaattgttattgttttacaagtttaccctttatgagagagaattaatttattttttaatcatagta-ttattataggttggagaaaaaga |
36034691 |
T |
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| Q |
393 |
tgtaacataattaggggtata |
413 |
Q |
| |
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| T |
36034690 |
tgtaacataatcaggagtata |
36034670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 15396851 - 15396879
Alignment:
| Q |
1 |
gtttttccctcgcataaggttgtgagcca |
29 |
Q |
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| T |
15396851 |
gtttttccctcgcataaggttgtgagcca |
15396879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 275 - 373
Target Start/End: Original strand, 2131470 - 2131568
Alignment:
| Q |
275 |
aaagttgttagtaacatcaaatttgttgacaactagtattgttttgcaagtttacccttgaggagacataattagnttatgtttccatcatagtattta |
373 |
Q |
| |
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||||||| |||||| || |||||||||||||| | ||||| ||| ||| ||||||||| |||||| | |||||| |||||||| |||||||||||||| |
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| T |
2131470 |
aaagttgatagtaatattaaatttgttgacaattgatattgctttacaaatttaccctttaggagagagaattagtttatgttttcatcatagtattta |
2131568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 312 - 371
Target Start/End: Original strand, 20880633 - 20880692
Alignment:
| Q |
312 |
attgttttgcaagtttacccttgaggagacataattagnttatgtttccatcatagtatt |
371 |
Q |
| |
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|||||||| |||||||| |||| |||||| |||||||| ||||||||||||||||||||| |
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| T |
20880633 |
attgttttacaagtttatccttcaggagagataattaggttatgtttccatcatagtatt |
20880692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 293 - 391
Target Start/End: Complemental strand, 24356592 - 24356494
Alignment:
| Q |
293 |
aaatttgttgacaactagtattgttttgcaagtttacccttgaggagacataattagnttatgtttccatcatagtatttagtacaggttgcacaaaaa |
391 |
Q |
| |
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||||||||||| || | |||||||||| ||||||||| || || ||| | |||| | ||||||||||| ||||||||||| |||| |||||| ||||| |
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| T |
24356592 |
aaatttgttgataattggtattgttttacaagtttacatttcagaagagagaatttgtttatgtttccaacatagtatttattacaagttgcataaaaa |
24356494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 233 - 412
Target Start/End: Complemental strand, 4681837 - 4681652
Alignment:
| Q |
233 |
tccctaaatatagga-ctcgttgaccaaatcacgggaactaacaaagttgttagtaacat---caaatttgttgacaactagtattgttttgcaagttta |
328 |
Q |
| |
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||||||||||||||| |||||||| |||||||||||| ||| |||||| |||||| || |||||||||||| || ||||||||| ||||||| |
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| T |
4681837 |
tccctaaatataggagctcgttgagtaaatcacgggaattaagcaagttgatagtaatatttacaaatttgttgatttttaatattgttttagaagttta |
4681738 |
T |
|
| Q |
329 |
cccttgaggagacataattagnttatgtttccatcatagt-atttagtacaggttgcacaaaaag-tgtaacataattaggggtat |
412 |
Q |
| |
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||| |||||| | ||| || |||| ||| |||| |||| |||| ||||| ||||| |||||| ||||| ||||||| |||||| |
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| T |
4681737 |
gcctccaggagagagaatcagtttatcttttcatcgtagtaattttatacagattgcagaaaaagatgtaagataattaagggtat |
4681652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 322 - 412
Target Start/End: Original strand, 39235918 - 39236009
Alignment:
| Q |
322 |
aagtttacccttgaggagacataattagnttatgtttccatcatagtatttagtacaggttgcacaaaaag-tgtaacataattaggggtat |
412 |
Q |
| |
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|||||||||||| |||||| | ||||| | |||| | ||||| |||||||| ||||| ||||| |||||| ||||| ||||||||| |||| |
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| T |
39235918 |
aagtttacccttcaggagagaaaattacttaatgtattcatcagagtatttattacagattgcagaaaaagatgtaatataattaggagtat |
39236009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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