View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: R108-tnk507-E66 (Length: 637)
Name: R108-tnk507-E66
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk507-E66 |
 | |
|
| [»] scaffold0855 (1 HSPs) |
| | |
|
| [»] scaffold0847 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0855 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: scaffold0855
Description:
Target: scaffold0855; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Original strand, 1218 - 1671
Alignment:
| Q |
1 |
attatatggttcaagaagtttatagtgaagatcctttaattaacctaatcaaagagaaatttgctagacataaaagagaaaaataaataacatggaaatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
1218 |
attatatggttcaagaagtttatagtgaagatcctttaattaacctaatcaaagagaaatttgctggacataaa-gagaaaaataaataacatggaaatt |
1316 |
T |
|
| Q |
101 |
aaaataaccatgatgatgttgcttctcaattcttcttcttcttcctctttgtatataagcgtgtgctgcttgttacccacaaaagtcttaatatttttgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1317 |
aaaataaccatgatgatgttgcttctcaattcttcttcttcttcctctttgtatataagcgtgtgctgcttgttacccacaaaagtcttaatttttttgg |
1416 |
T |
|
| Q |
201 |
ggtcagccaataaagccaaataacccaaataattttatgcgcaatcgatagtttcagaaaatggatgtgcacgatctaaatcttcttctatgcatcctgt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1417 |
ggtcagccaataaagccaaataacccaaataatttcatgcgcaatcgataatttcagaaaatggatgtgcacgatctaaatcttcttctatgcatcctgt |
1516 |
T |
|
| Q |
301 |
atgaggcagtagctgaacaattccaatttcttcacagctgcttgacgtgtaactcatagcacgtatcgtgcaacaactagtagctgaaccatctactttt |
400 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1517 |
atgaggtagtagctgaacacttccaatttcttcacagctgcttgacgtgcaactcatagcacgtatcgtgcaacaactagtagctgaactttctactttt |
1616 |
T |
|
| Q |
401 |
cgtctttccttgtctcatttctctctaccg-aatggtcatggtgactatacccca |
454 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||| ||||||||||||||||||| |
|
|
| T |
1617 |
cgtctttccttgtctcatttttctctaccgaaatgttcatggtgactatacccca |
1671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0847 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: scaffold0847
Description:
Target: scaffold0847; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Original strand, 1383 - 1836
Alignment:
| Q |
1 |
attatatggttcaagaagtttatagtgaagatcctttaattaacctaatcaaagagaaatttgctagacataaaagagaaaaataaataacatggaaatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
1383 |
attatatggttcaagaagtttatagtgaagatcctttaattaacctaatcaaagagaaatttgctggacataaa-gagaaaaataaataacatggaaatt |
1481 |
T |
|
| Q |
101 |
aaaataaccatgatgatgttgcttctcaattcttcttcttcttcctctttgtatataagcgtgtgctgcttgttacccacaaaagtcttaatatttttgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1482 |
aaaataaccatgatgatgttgcttctcaattcttcttcttcttcctctttgtatataagcgtgtgctgcttgttacccacaaaagtcttaatttttttgg |
1581 |
T |
|
| Q |
201 |
ggtcagccaataaagccaaataacccaaataattttatgcgcaatcgatagtttcagaaaatggatgtgcacgatctaaatcttcttctatgcatcctgt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1582 |
ggtcagccaataaagccaaataacccaaataatttcatgcgcaatcgataatttcagaaaatggatgtgcacgatctaaatcttcttctatgcatcctgt |
1681 |
T |
|
| Q |
301 |
atgaggcagtagctgaacaattccaatttcttcacagctgcttgacgtgtaactcatagcacgtatcgtgcaacaactagtagctgaaccatctactttt |
400 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1682 |
atgaggtagtagctgaacacttccaatttcttcacagctgcttgacgtgcaactcatagcacgtatcgtgcaacaactagtagctgaactttctactttt |
1781 |
T |
|
| Q |
401 |
cgtctttccttgtctcatttctctctaccg-aatggtcatggtgactatacccca |
454 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||| ||||||||||||||||||| |
|
|
| T |
1782 |
cgtctttccttgtctcatttttctctaccgaaatgttcatggtgactatacccca |
1836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 134
Target Start/End: Original strand, 9618948 - 9619053
Alignment:
| Q |
27 |
gaagatcctttaattaacctaatcaaagagaaatttgctagacataaaagagaaaaataaataacatggaaattaaaataaccatgatgatgttgcttct |
126 |
Q |
| |
|
||||||||| || ||||||||||||| ||||||| ||||| ||| | ||||||| ||||||||||||||| ||||||||||| |||| ||||||| || |
|
|
| T |
9618948 |
gaagatcctctacgtaacctaatcaaatagaaattaactagaaataga-gagaaaa-taaataacatggaaagtaaaataaccacgatggtgttgctcct |
9619045 |
T |
|
| Q |
127 |
caattctt |
134 |
Q |
| |
|
| |||||| |
|
|
| T |
9619046 |
cgattctt |
9619053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 456 - 493
Target Start/End: Complemental strand, 53881535 - 53881498
Alignment:
| Q |
456 |
aattgagatagtaagggcctctatgggaaaatatccca |
493 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
53881535 |
aattgagatagtaagggcctctattggaaaatatccca |
53881498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 27 - 111
Target Start/End: Original strand, 4962393 - 4962476
Alignment:
| Q |
27 |
gaagatcctttaattaacctaatcaaagagaaatttgctagacataaaagagaaaaataaataacatggaaattaaaataaccat |
111 |
Q |
| |
|
||||||| | || ||||||||||||| ||||| || | ||||||| | ||||| ||||||||||||| ||| |||||||||||| |
|
|
| T |
4962393 |
gaagatcatctacttaacctaatcaaggagaatttagttagacatgga-gagaagaataaataacatgaaaagtaaaataaccat |
4962476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 371 - 423
Target Start/End: Complemental strand, 7905762 - 7905710
Alignment:
| Q |
371 |
caacaactagtagctgaaccatctacttttcgtctttccttgtctcatttctc |
423 |
Q |
| |
|
||||||||||||| |||||| || ||||||| | |||||||||||||||||| |
|
|
| T |
7905762 |
caacaactagtagttgaaccttcaacttttcttaattccttgtctcatttctc |
7905710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 9748 times since January 2019
Visitors: 7932