View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-tnk507-E73 (Length: 565)
Name: R108-tnk507-E73
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk507-E73 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 38580655 - 38580959
Alignment:
| Q |
1 |
gtaacaaaaattcaatggatcataatcaacaaggaggtcaaccttcttcttcaaccaaagtggaaagaaagattgttgagaaaaataggagaaaccaaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38580655 |
gtaacaaaaattcaatggatcataatcaacaaggaggtcaaccttcttcttcaaccaaagtggaaagaaagattgttgagaaaaataggagaaaccaaat |
38580754 |
T |
|
| Q |
101 |
gaagatcctcttttctaacctcaactctattctccctagctataatccaaaggtaatttgttttgttttttaataaaccaaaggtgatctgtttaatttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38580755 |
gaagatcctcttttctaacctcaactctattctccctagctataatccaaaggtaatttgttttgttttttaataaaccaaaggtgatctgtttaatttc |
38580854 |
T |
|
| Q |
201 |
cattacattcatataaagatattgttaaagagtttcacatcggataaaaaataacttgaatacgtgtttataaactgggacaatcctcatttataagttg |
300 |
Q |
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|||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||| |||||||||||| |
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| T |
38580855 |
catttcattcatataaatatattgttaaagagtttcacatcggataaaaaatgacttgaatacgtgtttataagttggaacaatccttatttataagttg |
38580954 |
T |
|
| Q |
301 |
gtttt |
305 |
Q |
| |
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||||| |
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| T |
38580955 |
gtttt |
38580959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 38605860 - 38606074
Alignment:
| Q |
1 |
gtaacaaaaattcaatggatcataatcaacaaggaggtcaaccttcttcttcaaccaaagtggaaagaaagattgttgagaaaaataggagaaaccaaat |
100 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38605860 |
gtaacaaaaattcaatggatcaaaatcaacaaggaggtcgaccttcttcttcaaccaaagtggaaagaaagattgttgagaaaaataggagaaaccaaat |
38605959 |
T |
|
| Q |
101 |
gaagatcctcttttctaacctcaactctattctccctagctataatccaaaggtaatttgttttgttttttaataaaccaaaggtgatctgtttaatttc |
200 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| || |||||| |||| ||||||||||||||||||||||| |
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| T |
38605960 |
gaagatcctcttttctaacctcaactctcttctccctagctataatccaaaggtgattttttgattttttttataagccaaaggtgatctgtttaatttc |
38606059 |
T |
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| Q |
201 |
cattacattcatata |
215 |
Q |
| |
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||| ||||||||||| |
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| T |
38606060 |
catcacattcatata |
38606074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 38561439 - 38561661
Alignment:
| Q |
1 |
gtaacaaaaattcaatggatcataatcaacaaggaggtcaaccttcttcttcaaccaaagtggaaagaaagattgttgagaaaaataggagaaaccaaat |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38561439 |
gtaacaaaaattcaatggatcaaaatcaacaaggaggtcgaccttcttcttcaaccaaagtggaaagaaagattgttgagaaaaataggagaaaccaaat |
38561538 |
T |
|
| Q |
101 |
gaagatcctcttttctaacctcaactctattctccctagctataatccaaaggtaatttgttttgtttttt---------aataaaccaaaggtgatctg |
191 |
Q |
| |
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|||||||||||||||||| ||||||||| |||||||||||||||||| |||||| |||| ||| |||||| |||||||||||| ||||| |
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| T |
38561539 |
gaagatcctcttttctaaactcaactctcttctccctagctataatcaaaaggtgatttctttgttttttttttcttttctataaaccaaagggtatctg |
38561638 |
T |
|
| Q |
192 |
tttaatttccattacattcatat |
214 |
Q |
| |
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|||||||||||| |||||||||| |
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| T |
38561639 |
tttaatttccatcacattcatat |
38561661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 309 - 398
Target Start/End: Original strand, 38581152 - 38581241
Alignment:
| Q |
309 |
ttcatgtgaggtataaattgacattgagttttcttttagagatttgcaactacaatgttatttcatacattgacatctaaaatcacaatt |
398 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38581152 |
ttcatgtgaggtataaattgacattgagttttcttttagagatttgtaactataatgttatttcatacattgacatctaaaatcacaatt |
38581241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 395 - 527
Target Start/End: Original strand, 38579984 - 38580118
Alignment:
| Q |
395 |
aattcatctttttaagttgaataaatagggngnctagagntcgaactccagtttttatatataacaatacatgatgtctctgtc-actgaactataccag |
493 |
Q |
| |
|
|||||||||||||||| ||||||| || || | |||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||| || |
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| T |
38579984 |
aattcatctttttaagatgaataagtaaggtgtctagagtccgaacttcagtttttatatataacaatacatgatgtctctgtcaactgaactatactag |
38580083 |
T |
|
| Q |
494 |
taagaatacncgat-anaagagcttatccttttaa |
527 |
Q |
| |
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|||| |||| |||| | |||||||||| ||||||| |
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| T |
38580084 |
taaggatactcgataataagagcttattcttttaa |
38580118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 11 - 146
Target Start/End: Complemental strand, 38622460 - 38622328
Alignment:
| Q |
11 |
ttcaatggatcataatcaacaaggaggtcaaccttcttcttcaaccaaagtggaaagaaagattgttgagaaaaataggagaaaccaaatgaagatcctc |
110 |
Q |
| |
|
||||||||| ||| ||||||||| | ||||||||||||| ||||||||| ||||||||| | |||||||||||||||||||| || |||||||||||| |
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| T |
38622460 |
ttcaatggaccatgatcaacaagaatgtcaaccttcttc---aaccaaagtcgaaagaaaggtcgttgagaaaaataggagaaatcagatgaagatcctc |
38622364 |
T |
|
| Q |
111 |
ttttctaacctcaactctattctccctagctataat |
146 |
Q |
| |
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| ||| || || |||||| |||| |||||||||||| |
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| T |
38622363 |
tattccaaacttaactctcttcttcctagctataat |
38622328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 52 - 154
Target Start/End: Original strand, 30195177 - 30195279
Alignment:
| Q |
52 |
caaccaaagtggaaagaaagattgttgagaaaaataggagaaaccaaatgaagatcctcttttctaacctcaactctattctccctagctataatccaaa |
151 |
Q |
| |
|
|||||||||| ||||||| | | ||||| ||||| || ||||| || ||||||||||||| || || ||||||||| ||||||||| ||||||||| || |
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|
| T |
30195177 |
caaccaaagttgaaagaaggctcgttgaaaaaaacagaagaaatcagatgaagatcctctactccaaactcaactctcttctccctaactataatcccaa |
30195276 |
T |
|
| Q |
152 |
ggt |
154 |
Q |
| |
|
||| |
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|
| T |
30195277 |
ggt |
30195279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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