View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-tnk507-E74 (Length: 626)
Name: R108-tnk507-E74
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk507-E74 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 220 - 468
Target Start/End: Original strand, 31059225 - 31059474
Alignment:
| Q |
220 |
caattggaccatatgaaaccgaccagtatatgcatcagcaataaatcctcctaccagaggcattaaagttgttactcctatccaggtgtttacattttta |
319 |
Q |
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| T |
31059225 |
caattggaccatatgaaatcgaccagtatatgcatcagcaataaatcctcctaccagaggcattaaagttgttactcctatccaggtgtttacattttta |
31059324 |
T |
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| Q |
320 |
gcagctgttttgagatcttcatgaatcacttcagttaggtatgtgataaggttcatggttagtccatagtggctcatcctttcactaatttcaaccactg |
419 |
Q |
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| T |
31059325 |
gcagctgttttgagatcttcatgaatcacttcagtcaggtatgtgataaggttcatggttagtccatagtggctcatcctttcactaatttcaaccactg |
31059424 |
T |
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| Q |
420 |
ctcaaaatcnagt-aaacatgttacatggtaaagcattgatgaaataaaa |
468 |
Q |
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| T |
31059425 |
ctcaaaatcaagtaaaacatgttacatgttaaagcattgatgaaataaaa |
31059474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 362
Target Start/End: Original strand, 31085252 - 31085389
Alignment:
| Q |
225 |
ggaccatatgaaaccgaccagtatatgcatcagcaataaatcctcctaccagaggcattaaagttgttactcctatccaggtgtttacatttttagcagc |
324 |
Q |
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|||||||| |||| |||||| | || |||||||||| |||||| |||| |||||||| || |||||| |||| ||| ||||||||| || || || |
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| T |
31085252 |
ggaccataggaaatcgaccaatgtaagcatcagcaagaaatccacctattagaggcatcaaggttgttgttcctgaccaatagtttacattctttgctgc |
31085351 |
T |
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| Q |
325 |
tgttttgagatcttcatgaatcacttcagttaggtatg |
362 |
Q |
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| T |
31085352 |
agttttaagatcttcatgcatcaccttagtaaggtatg |
31085389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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