View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-tnk507-E81 (Length: 667)
Name: R108-tnk507-E81
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk507-E81 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 101 - 416
Target Start/End: Original strand, 27977807 - 27978119
Alignment:
| Q |
101 |
ctcatgaatataataaccagcttacttttgtgannnnnnncatgtcttacgcaattaattaatactttgatttgcttccaaaacacacttctttaactcc |
200 |
Q |
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| T |
27977807 |
ctcatgaatataataaccagcttacttttatgatttttttcatgtcttacacaattaatac---cattgatttgcttccaaaacacacttctttaactcc |
27977903 |
T |
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| Q |
201 |
aatatactccattagcaacaaattgaaatggaccgcaatcgcnnnnnnnggtttatatattctatttaccattccaaatacataagtcaaattaattatt |
300 |
Q |
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| T |
27977904 |
aatatactccattagcaacaaattgaaatggaccacaatcgctttttttggtttatatattgtatttaccattccaaatacataaatcaaattaattatt |
27978003 |
T |
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| Q |
301 |
atcaatatagaaggacctattttgacctactgcaatgtcccaactgctcttcaacattcgattaccagcattatgggagttcaagacgttgttggcaccg |
400 |
Q |
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| T |
27978004 |
atcaatatagaaggacctattttgacctactgcaatgtcccaactgctcttcaacattcgattaccagcattatgggagttcaagacgttgttggcaccg |
27978103 |
T |
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| Q |
401 |
gtaagtacttgggtct |
416 |
Q |
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| T |
27978104 |
gtaagtacttaggtct |
27978119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 27977671 - 27977763
Alignment:
| Q |
1 |
ctaatttcaaggttggattttcttctataattcttgaatctttaaaatccatgtatttgtgtttaatgtgttcatatattcagaaagcaaatg |
93 |
Q |
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| T |
27977671 |
ctaatttcaaggttggattttcttctataattcttgcatctttaaaatccatgtatttgtgtttaatgtgttcatatattcagaaagcaaatg |
27977763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 416 - 455
Target Start/End: Original strand, 19815460 - 19815499
Alignment:
| Q |
416 |
tagcagatacaaaaataatttgactttattttataatttg |
455 |
Q |
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| T |
19815460 |
tagcagatacgaaaataatttgactttattttataatttg |
19815499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 460
Target Start/End: Original strand, 69023 - 69056
Alignment:
| Q |
427 |
aaaataatttgactttattttataatttggtata |
460 |
Q |
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| T |
69023 |
aaaataatttgactttattttatattttggtata |
69056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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