View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: R108-tnk55-10 (Length: 832)
Name: R108-tnk55-10
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk55-10 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 380; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Original strand, 13630139 - 13630548
Alignment:
| Q |
1 |
gcgcaaagaggaacaatggcgaatatctaactttgttacattttccaatgtgtttaggtcccgtggaacttgctgctgctggagtttccattgctttgtt |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13630139 |
gcgcaaagagaaacaatggcgaatatctaactttgttacattttccaatgtgtttaggtcccgtggaacttgctgctgctggagtttccattgctttgtt |
13630238 |
T |
|
| Q |
101 |
caaccaagcttcaaagatcaccatatttcctcttgttagtattacaacttcctttgtagctgaggaagatactatcaaaaggatgaatatcaaagcagct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13630239 |
caaccaagcttcaaagatcaccatatttcctcttgttagtattacaacttcctttgtagctgaggaagatactatcaaaaggatgaatatcaaagcagct |
13630338 |
T |
|
| Q |
201 |
gaaaatgataagagtaaattaactgaagtaacacctgagagtgatgtggttcaagacatagagaaagggacacccaaagagagtattaagactcaaaaag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
13630339 |
gaaaatgataagagtaaattaactgaagtaacacctgagagtgatgtggttcaagacatagagaaagggacacccaaagagagtaataaggctcaaaaag |
13630438 |
T |
|
| Q |
301 |
aatctgtggtaggacacaatgaaacaaatgggtacacttgggaacaatgataagactaatggagttgggtatactttctctctcccctatctctttccat |
400 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
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|
| T |
13630439 |
aatctgtggtaggacacaatgaaacaaat-ggtacacttgggaacaatgataagactaatggagtt-ggtatactttctctctcccctgtctctttccat |
13630536 |
T |
|
| Q |
401 |
ctatatatatta |
412 |
Q |
| |
|
|||||||||||| |
|
|
| T |
13630537 |
ctatatatatta |
13630548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Original strand, 13730551 - 13730960
Alignment:
| Q |
1 |
gcgcaaagaggaacaatggcgaatatctaactttgttacattttccaatgtgtttaggtcccgtggaacttgctgctgctggagtttccattgctttgtt |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13730551 |
gcgcaaagagaaacaatggcgaatatctaactttgttacattttccaatgtgtttaggtcccgtggaacttgctgctgctggagtttccattgctttgtt |
13730650 |
T |
|
| Q |
101 |
caaccaagcttcaaagatcaccatatttcctcttgttagtattacaacttcctttgtagctgaggaagatactatcaaaaggatgaatatcaaagcagct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13730651 |
caaccaagcttcaaagatcaccatatttcctcttgttagtattacaacttcctttgtagctgaggaagatactatcaaaaggatgaatatcaaagcagct |
13730750 |
T |
|
| Q |
201 |
gaaaatgataagagtaaattaactgaagtaacacctgagagtgatgtggttcaagacatagagaaagggacacccaaagagagtattaagactcaaaaag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
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|
| T |
13730751 |
gaaaatgataagagtaaattaactgaagtaacacctgagagtgatgtggttcaagacatagagaaagggacacccaaagagagtaataaggctcaaaaag |
13730850 |
T |
|
| Q |
301 |
aatctgtggtaggacacaatgaaacaaatgggtacacttgggaacaatgataagactaatggagttgggtatactttctctctcccctatctctttccat |
400 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
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|
| T |
13730851 |
aatctgtggtaggacacaatgaaacaaat-ggtacacttgggaacaatgataagactaatggagtt-ggtatactttctctctcccctgtctctttccat |
13730948 |
T |
|
| Q |
401 |
ctatatatatta |
412 |
Q |
| |
|
|||||||||||| |
|
|
| T |
13730949 |
ctatatatatta |
13730960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 510 - 832
Target Start/End: Original strand, 13630646 - 13630969
Alignment:
| Q |
510 |
ccgcaatcatgtttagtacgtcttagaattctcctttgcaaaattttaannnnnnnnn-gtcactagtttttgttgattatttaactattattctagcag |
608 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
13630646 |
ccgcaatcatgtttagtacatcttaaaattctcctttgcaaaattttaattttgtttttgtcactagtttttgttgattattttactattattctagcag |
13630745 |
T |
|
| Q |
609 |
tgatgaataatgaacaagaaccccatttactatcctcagattctaggagcagtaagattaaggagatagttgtgaagaagaagaagagacacattgcttc |
708 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13630746 |
tgatgaataatgaacaagaaccccatttactatcctcagattctaggagcagtaagattaaggagatagttgtgaagaagaagaagagacacattgcttc |
13630845 |
T |
|
| Q |
709 |
agcatcaacagcactactctttggctcaattcttggtctcctacaagcttcagtccttatatttggagctaaacctctattatatgtgatgggtgtaaaa |
808 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13630846 |
tgcatcaacagcactactctttggctcaattcttggtctcctacaagcttcagtccttatatttggagctaaacctctattatatgtgatgggtgtaaaa |
13630945 |
T |
|
| Q |
809 |
catgtaagattatttatgttagat |
832 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
13630946 |
catgtaagattatttatgttagat |
13630969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 510 - 832
Target Start/End: Original strand, 13731058 - 13731381
Alignment:
| Q |
510 |
ccgcaatcatgtttagtacgtcttagaattctcctttgcaaaattttaannnnnnnnn-gtcactagtttttgttgattatttaactattattctagcag |
608 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
13731058 |
ccgcaatcatgtttagtacatcttaaaattctcctttgcaaaattttaattttgtttttgtcactagtttttgttgattattttactattattctagcag |
13731157 |
T |
|
| Q |
609 |
tgatgaataatgaacaagaaccccatttactatcctcagattctaggagcagtaagattaaggagatagttgtgaagaagaagaagagacacattgcttc |
708 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13731158 |
tgatgaataatgaacaagaaccccatttactatcctcagattctaggagcagtaagattaaggagatagttgtgaagaagaagaagagacacattgcttc |
13731257 |
T |
|
| Q |
709 |
agcatcaacagcactactctttggctcaattcttggtctcctacaagcttcagtccttatatttggagctaaacctctattatatgtgatgggtgtaaaa |
808 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13731258 |
tgcatcaacagcactactctttggctcaattcttggtctcctacaagcttcagtccttatatttggagctaaacctctattatatgtgatgggtgtaaaa |
13731357 |
T |
|
| Q |
809 |
catgtaagattatttatgttagat |
832 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
13731358 |
catgtaagattatttatgttagat |
13731381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 48 - 197
Target Start/End: Original strand, 13748418 - 13748567
Alignment:
| Q |
48 |
atgtgtttaggtcccgtggaacttgctgctgctggagtttccattgctttgttcaaccaagcttcaaagatcaccatatttcctcttgttagtattacaa |
147 |
Q |
| |
|
||||| ||||| || |||||||||||||| || |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
13748418 |
atgtggttaggaccggtggaacttgctgcagcaggagtttccattgctttgttcaaccaagcttcaaggattaccatatttcctcttgttagtattacaa |
13748517 |
T |
|
| Q |
148 |
cttcctttgtagctgaggaagatactatcaaaaggatgaatatcaaagca |
197 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
13748518 |
cttcctttgtagctgaggaagatactattgaaagaatgaatatcaaagca |
13748567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 689 - 813
Target Start/End: Original strand, 13749570 - 13749694
Alignment:
| Q |
689 |
aagaagagacacattgcttcagcatcaacagcactactctttggctcaattcttggtctcctacaagcttcagtccttatatttggagctaaacctctat |
788 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || || ||| |||| ||||| || | ||| || || | ||||||||||||||||||| ||||| |
|
|
| T |
13749570 |
aagaagagacacattgcttcagcatcaacagcactccttttcggcacaatgcttggcctaattcaaactacaatacttatatttggagctaaacttctat |
13749669 |
T |
|
| Q |
789 |
tatatgtgatgggtgtaaaacatgt |
813 |
Q |
| |
|
|| || |||||| |||||||||| |
|
|
| T |
13749670 |
tagctgccatgggtataaaacatgt |
13749694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 106
Target Start/End: Original strand, 13647993 - 13648051
Alignment:
| Q |
48 |
atgtgtttaggtcccgtggaacttgctgctgctggagtttccattgctttgttcaacca |
106 |
Q |
| |
|
||||| ||||| || |||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
13647993 |
atgtggttaggaccggtggaacttgctgcagcaggagtttccattgctttgttcaacca |
13648051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 2e-33; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 48 - 205
Target Start/End: Original strand, 9276514 - 9276671
Alignment:
| Q |
48 |
atgtgtttaggtcccgtggaacttgctgctgctggagtttccattgctttgttcaaccaagcttcaaagatcaccatatttcctcttgttagtattacaa |
147 |
Q |
| |
|
||||||||||| || || |||||||| || || ||||||||||||||| |||||||||||||||||| ||| ||||| |||||| | || |||||||||| |
|
|
| T |
9276514 |
atgtgtttagggccggttgaacttgcggcagcaggagtttccattgctgtgttcaaccaagcttcaaggattaccatttttcctttggtcagtattacaa |
9276613 |
T |
|
| Q |
148 |
cttcctttgtagctgaggaagatactatcaaaaggatgaatatcaaagcagctgaaaa |
205 |
Q |
| |
|
|||||||||||||||| ||||||||||| | || || |||| ||||||||| ||||| |
|
|
| T |
9276614 |
cttcctttgtagctgaagaagatactatggatagaatcaataccaaagcagcagaaaa |
9276671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 688 - 790
Target Start/End: Original strand, 9277125 - 9277227
Alignment:
| Q |
688 |
gaagaagagacacattgcttcagcatcaacagcactactctttggctcaattcttggtctcctacaagcttcagtccttatatttggagctaaacctcta |
787 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||| |||||| || ||||||| || | |||||| || ||||||||||| ||||||||||||| |
|
|
| T |
9277125 |
gaagaagaggcacattgcttcagcatcaacagcattactttttggcacagttcttggccttattcaagctgcaacccttatatttgcagctaaacctcta |
9277224 |
T |
|
| Q |
788 |
tta |
790 |
Q |
| |
|
||| |
|
|
| T |
9277225 |
tta |
9277227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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