View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-tnk55-2 (Length: 624)
Name: R108-tnk55-2
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk55-2 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 565; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 1 - 624
Target Start/End: Original strand, 21001482 - 21002100
Alignment:
| Q |
1 |
gtcccttgtgcaccgtagaattgcccttacaaaaggagaaaaaataatattcggaataataagataatatggatatggtttgaatgatacatcatacatg |
100 |
Q |
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| T |
21001482 |
gtcccttgtgcaccgtagaattgcccttacaaaaggagaaaaaataatatccggaataataagataatatggatatggtttgaatgatacatcatacatg |
21001581 |
T |
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| Q |
101 |
tgatgtttggacaaactattatatataaggaaatttagaaatcaattgcaaagaggtaatttgagatactctaacatgtgttacgataaaatattgttgt |
200 |
Q |
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| T |
21001582 |
tgatgtttggacaaactattatatataaggaaatttagaaatcaattgtaaagaggtaatttgagatactctaacatgtgttacgataaaatattgttgt |
21001681 |
T |
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| Q |
201 |
gttgcaattttttaatttattcttacagtcctccttaaagcaaagctcattaagctataaaaagaaaggaatgtatatgggattcaaccaaacatgattg |
300 |
Q |
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| T |
21001682 |
gttgcaattttttaatttattcttacagtcctccttaaagcaaagctcattaagctataaaaagaaa--aatgtatatgg-attcaaccaaacatgattg |
21001778 |
T |
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| Q |
301 |
gaaagtcaacttccgactaaaagagggcaaacaggctatttgcgataaatgtatattaagggtgatcggaattcatgttcgtctggtaaaagaaaagaat |
400 |
Q |
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| T |
21001779 |
-aaagtcaact-ccgactaaaagagggcaaacaggctatttgcgataaatgtatattaagggtgatcggaattcatgctcgtctggtaaaagaaaagaat |
21001876 |
T |
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| Q |
401 |
catatagattagaacattgtgatattagagtttaagattttggagaaactcgacagtggaactttgacaaagacagataatataggatggtactataatg |
500 |
Q |
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| T |
21001877 |
catatagattagaacattgtgatattagagtttaagattttggagaaactcgacagtggaattttgacaaagacagataatataggatggtactataatg |
21001976 |
T |
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| Q |
501 |
atactatgttgaaattatagtctttagtcctttccttttgatgtaaagggatgaaattaatactcagaatcagaataatataattgatttgctgtgagtg |
600 |
Q |
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| T |
21001977 |
atactatgttgaaattatagtctttagtcctttcctttcgatgtaaagggatgaaattaatactcagaatcagaataatataattgatttgctgtgagtg |
21002076 |
T |
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| Q |
601 |
acacgttggatgtcaggttgagat |
624 |
Q |
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| T |
21002077 |
acatgttggatgtcaggttgagat |
21002100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 122 - 503
Target Start/End: Original strand, 20991625 - 20992012
Alignment:
| Q |
122 |
tatataaggaaatttagaaatcaattgcaaagaggtaatttgagatactctaacatgtgttacgataaaatattgttgtgttgcaat--tttttaattta |
219 |
Q |
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||||||||||||| |||||||||| | || |||||||||| ||||||||||||||| || |||| |||||||||| |||| || || |||||||| |
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| T |
20991625 |
tatataaggaaatatagaaatcaaccgtaa-gaggtaatttaagatactctaacatgctatatgatagaatattgttgcgttgagatacttcttaattta |
20991723 |
T |
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| Q |
220 |
ttcttacagtcctccttaaagcaaagctcattaagctataaaaa-gaaaggaatgtatatgggattcaaccaaacatgattggaaagtcaacttccgact |
318 |
Q |
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||| ||||||||||||||| | |||||||| ||||||||||||| |||| ||||||||||| | || | ||||||||||| |||||||| || |||| |
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| T |
20991724 |
ttcgtacagtcctccttaatgtaaagctcactaagctataaaaaagaaa--aatgtatatgg-actccataaaacatgattg-aaagtcaagttg-gact |
20991818 |
T |
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| Q |
319 |
aaaa--gagggcaaaca--ggct-------atttgcgataaatgtatattaagggtgatcggaattcatgttcgtctggtaaaagaaaagaatcatatag |
407 |
Q |
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| T |
20991819 |
aaaattgtgggcagaccatggcttcactgtattcgggataaatctatattaaaggtgatcggaattcatgcaggtcttgtaaaagaaaagaatcgtatag |
20991918 |
T |
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| Q |
408 |
attagaacattgtgatattagagtttaagattttggagaaactcgacagtggaactttgacaaagacagataatataggatggtactataatgata |
503 |
Q |
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| T |
20991919 |
ataagcacactgtg--atgatagtttcagattttttagaaactcagcagtggaattgtgacatggacagataatataggatggtactatactgata |
20992012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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