View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-tnk55-3 (Length: 373)
Name: R108-tnk55-3
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk55-3 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 1597320 - 1596948
Alignment:
| Q |
1 |
cataacacattgtcctcttcattcatttcccaaatcaagcatgattatcaagcaaaacaggatacaccggatacttccaaagatcactcagcataaaaaa |
100 |
Q |
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| T |
1597320 |
cataacacattgtcctcttcattcatttcccaaatcaagcatgattatcaagcaaaacaggatacaccg-atacttccaaagatcaatcagcataaaaaa |
1597222 |
T |
|
| Q |
101 |
cataaaatagtattaaatgaatttcctaattgcttcaatttcatacattctatatcagaaaacattttcatttgtgatgaaacaaaacgcaattagagct |
200 |
Q |
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| T |
1597221 |
cataaaatagtattaaatgaatttcttaattgcttcaatttcatacattctatatcagaaaacattttcatttgtgatgaaacaaaacgcaattagaact |
1597122 |
T |
|
| Q |
201 |
catataaattatatttccatttgcaattctcttaattaccatcatatagattaaagc-----nnnnnnnnnnnnctatcatgcataacaatcaatatata |
295 |
Q |
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| T |
1597121 |
catataaattatatttccatttgcaattctcttaattaccatcatatagattaaagcaacaaaaaaaaaaaaaactatcatgcataacaatcaatatata |
1597022 |
T |
|
| Q |
296 |
gtagcagaaggaacatagttagtagcttaaaccgatctaaacatgaaattagaactcacaggggttttggtttc |
369 |
Q |
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| T |
1597021 |
gtagctgaaggaacatagttagtagcttaaactgatctaaacatgaaattagaactcacagtgtttttgttttc |
1596948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 99
Target Start/End: Complemental strand, 555373 - 555278
Alignment:
| Q |
3 |
taacacattgtcctcttcattcatttcccaaatcaagcatgattatcaagcaaaacaggatacaccggatacttccaaagatcactcagcataaaaa |
99 |
Q |
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| T |
555373 |
taacacattgtccttttcattaatttccaaaatcaagcataattctcgagcaaaacaggataca-ctgatactttcaaataccactcagaataaaaa |
555278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 4 - 102
Target Start/End: Original strand, 41225631 - 41225728
Alignment:
| Q |
4 |
aacacattgtcctcttcattcatttcccaaatcaagcatgattatcaagcaaaacaggatacaccggatacttccaaagatcactcagcataaaaaaca |
102 |
Q |
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|||||| ||||||||||||||||||| ||| |||||||| ||| | ||||||| |||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
41225631 |
aacacactgtcctcttcattcatttctcaagtcaagcataattctagagcaaaaaaggatacacc-aatacttccaaagatcactcaccataaaaaaca |
41225728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 41225927 - 41225971
Alignment:
| Q |
213 |
atttccatttgcaattctcttaattaccatcatatagattaaagc |
257 |
Q |
| |
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| T |
41225927 |
atttccatttgcaattctcttaattaccatcatataaattaaagc |
41225971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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