View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-tnk65-2 (Length: 358)
Name: R108-tnk65-2
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk65-2 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 36877883 - 36877526
Alignment:
| Q |
1 |
cattctacctgatgacacaactgttgctgttaaatgcatggaagaatctgattttcaaggggatgatgagttctataccgaagtggagattattggcaac |
100 |
Q |
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| T |
36877883 |
cattctacctgatgacacaactgttgctgttaaatgcatggaagaatctgattttcaaggggatgatgagttctataccgaagtggagattattggcaac |
36877784 |
T |
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| Q |
101 |
ttgaaacaccgcaatctagtgccattaagagggtgttgtgtcgttgatgacgatcataatcaagagcacaaaaataggtatcttgtttatgattatatgc |
200 |
Q |
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| T |
36877783 |
ttgaaacaccgcaatctagtgccattaagagggtgttgtgtggttgatgacgatcataatcaagagcacaaaaataggtatcttgtttatgattatatgc |
36877684 |
T |
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| Q |
201 |
caaatggtaaccttgaagatcatatctttccatcattggacaacgaaaatgaacagaaattgttgacttggcctcaaagaaaaaacataatcttggatgt |
300 |
Q |
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| T |
36877683 |
caaatggtaaccttgaagatcatatctttccatcattggacaacgaaaatgaacagaaattgttgacttggcctcaaagaaaaaacataatcttggatgt |
36877584 |
T |
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| Q |
301 |
ggcaagtgggttggtttatttgcaccttggagttaaacctgctatttatcacagagat |
358 |
Q |
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| T |
36877583 |
ggcaagtgggttggtttatttgcactttggagttaaacctgctatttatcacagagat |
36877526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 22 - 358
Target Start/End: Complemental strand, 36871276 - 36870939
Alignment:
| Q |
22 |
tgttgctgttaaatgcatggaagaatctgattttcaaggggatgatgagttctataccgaagtggagattattggcaacttgaaacaccgcaatctagtg |
121 |
Q |
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| T |
36871276 |
tgttgcggttaaaaggattgaagaatctgattatcaaggagatgttgagttttacagagaggtggggattgttagtagcttgaaacatcgcaatttggtg |
36871177 |
T |
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| Q |
122 |
ccattaagagggtgttgtgtcgttgatgacgatcataatcaagagcacaaaaataggtatcttgtttatgattatatgccaaatggtaaccttgaagatc |
221 |
Q |
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| T |
36871176 |
ccgctaagaggatgttgtgttgttggtgaagatgagaatcctgagtactttggaaagtatcttgtctatgattatatgccgaatggtagtcttaaagacc |
36871077 |
T |
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| Q |
222 |
atatctttccatcattggacaacgaaaa-tgaacagaaattgttgacttggcctcaaagaaaaaacataatcttggatgtggcaagtgggttggtttatt |
320 |
Q |
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| T |
36871076 |
atcttttccctgaaatggataaccaaaaatgaaaaacaatctttgacttggtctcaaagaaaaaacataatcttggatgtggcgaacgcgttggtttatt |
36870977 |
T |
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| Q |
321 |
tgcaccttggagttaaacctgctatttatcacagagat |
358 |
Q |
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| T |
36870976 |
tgcactttggagttaagcctcctgtttatcacagagat |
36870939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 281 - 351
Target Start/End: Original strand, 718371 - 718441
Alignment:
| Q |
281 |
aaaaacataatcttggatgtggcaagtgggttggtttatttgcaccttggagttaaacctgctatttatca |
351 |
Q |
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| T |
718371 |
aaaaacataatcttggatgtgggaaaagggttggcttatttacactatggagttaagcctgcaatttatca |
718441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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