View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-tnk65-8 (Length: 1016)
Name: R108-tnk65-8
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk65-8 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 941; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 941; E-Value: 0
Query Start/End: Original strand, 3 - 1016
Target Start/End: Original strand, 33934609 - 33935623
Alignment:
| Q |
3 |
tcggactgcagagtgattgtagtttctttattatcattagtgaaaatttgaatttgtgtaaacttatgtagagaaacatgcgatgtttggtactgaagtt |
102 |
Q |
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| T |
33934609 |
tcggactgcagagtgattgtagtttctttattatcattagtgaaaatttgaatttgtgtaaacttatgtagagaaacatgcgatgtttggtaatgaagtt |
33934708 |
T |
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| Q |
103 |
tggtcaatatatctatatctcggactgcagagtgattgtagtgtttctttttatcattagtgaaaattagaatttacgatacacaacttatatttaaata |
202 |
Q |
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| T |
33934709 |
tggtcaatatgtctatatctcggactgcagagtgattatagtgtttctttttatcattagtgaaaattagaatttacgatatacaacttatatttaaata |
33934808 |
T |
|
| Q |
203 |
tcacgatgcaaattaaacactgcttgtgaataactacgactaatagttaacaataatattgactttaggtagggcactccatgtagtcgaactctaggta |
302 |
Q |
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| T |
33934809 |
tcacgatgcaaattaaacactgcttgtgaataactacgactaatagttaacaataatattgactttaggtagggcactccatgtagtcgaactctaggta |
33934908 |
T |
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| Q |
303 |
gggcacccttgtggtgattattggaaaaaattaaagtctcacatagaaaagacacgagtctaatagtgagagatattgaccatattataaactggttttt |
402 |
Q |
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| T |
33934909 |
gggcacccttgtggtgattattggaaaaaattaaagtcccacatagaaaagacacgagtctaatagtgagagatattgaccatattataaactggttttt |
33935008 |
T |
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| Q |
403 |
gtaaggatgagtttacaacaataattttgatcgatcattttatactaagacactattgtttttagttttctacttgttagaatagcagccacacttcaaa |
502 |
Q |
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| T |
33935009 |
gtaaggatgagtttacaataataattttgatcgatcattttatactaagacactattgtttttagttttctacttgttagaatagcagccacacttcaaa |
33935108 |
T |
|
| Q |
503 |
agaataaatacatgagaaacgtaaacaatgaacacccgatgtttggtactggtaacgaggttcggcctgttgtgcctacacctccgattatagagtgaca |
602 |
Q |
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| T |
33935109 |
agaataaatacatgagaaacgtaaacaatgaacacccgatgtttggtactggtaacgaggttcggcttgttgtgcctacacctccgattacagagtgaca |
33935208 |
T |
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| Q |
603 |
acaatttctttataatatttcaaactttaagtttacaatatacaacttgtatttaaatac--tacattcgaacaacatgtccatttaccgggtaactatg |
700 |
Q |
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| T |
33935209 |
acaatttctttataatatttcaaactttaagtttgcaatatacaacttgtatttaaatactatacgttcgaacaacatgtccatttacc-agtaactatg |
33935307 |
T |
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| Q |
701 |
actcataaacaacaataccttaacacacccttttcattcactctttcccaactttctttgtcaatattccttaagtgttgccacctttgaattattctac |
800 |
Q |
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| T |
33935308 |
actcataaacaacaatcccttaacacacccttttcattcactctttcccaactttctttgtcaatattccttaagtgttgccacctttgaattattctac |
33935407 |
T |
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| Q |
801 |
attttcccttcttttgatagaggaaattaagttattataaactacacatcctttgtgcagctgttaaaaaagactttttgaattctcataattttttcct |
900 |
Q |
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| T |
33935408 |
attttcccttcttttgatagaagaaattaagttattataaactacacatcctttgtgcagctgttaaaaaagactttttgaattctcataattttttcct |
33935507 |
T |
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| Q |
901 |
tttgattctagctagggtaatattaatataggttggtgtgcactgcgctgtgttcaaccgttcatacacctttcaattgacctttttggccatgaaagct |
1000 |
Q |
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| T |
33935508 |
tttgattctagctagggtaatattaatataggttcgtgtgcactgcgctgtgttcaaccgttcatacacctttcaattgacctttttggccatgaaagct |
33935607 |
T |
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| Q |
1001 |
gagtcctaaaagtgat |
1016 |
Q |
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| T |
33935608 |
gagtcctaaaagtgat |
33935623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 57 - 177
Target Start/End: Original strand, 33934544 - 33934663
Alignment:
| Q |
57 |
tgtgtaaacttatgtagagaaacatgcgatgtttggtactgaagtttggtcaatatatctatatctcggactgcagagtgattgtagtgtttcttt-tta |
155 |
Q |
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||||||||||| ||| ||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
33934544 |
tgtgtaaacttgtgtggagaaccatgcgatgtttggtaaccaagtttggtcaatatgtctatatctcggactgcagagtgattgta--gtttctttatta |
33934641 |
T |
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| Q |
156 |
tcattagtgaaaattagaattt |
177 |
Q |
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| T |
33934642 |
tcattagtgaaaatttgaattt |
33934663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 635 - 665
Target Start/End: Complemental strand, 31592797 - 31592767
Alignment:
| Q |
635 |
ttacaatatacaacttgtatttaaatactac |
665 |
Q |
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| T |
31592797 |
ttacaatatacaacttgtatttaaatactac |
31592767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 632 - 665
Target Start/End: Complemental strand, 14298024 - 14297991
Alignment:
| Q |
632 |
agtttacaatatacaacttgtatttaaatactac |
665 |
Q |
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| T |
14298024 |
agtttacagtatacaacttgtatttaaatactac |
14297991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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