View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-tnk66-7 (Length: 292)
Name: R108-tnk66-7
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk66-7 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 28437180 - 28437471
Alignment:
| Q |
1 |
gatggatcgtggcaaagacaataccagaaaacatttgtttaaattctacatttaacaatggtcaaagtatttgtgggttgaatagcaattgtacccttag |
100 |
Q |
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| T |
28437180 |
gatggatcgtggcaaagacaataccagaaaacatttgtttaaattctacatttaacaatggtcaaagtatttgtgggttgaatagcaattgtacccttag |
28437279 |
T |
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| Q |
101 |
agatgaccaaaggccaatgtgtacttgtctagaaggatattctctaattgattcaaacaacatgtatggggattgcataccaaattcccaaatgaagaaa |
200 |
Q |
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| T |
28437280 |
agatgaccaaaggccaatgtgtacttgtctagaaggatattctctaattgattcaaacaacatgtatggggattgcataccaaattcccaaatgaagaaa |
28437379 |
T |
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| Q |
201 |
attgattctccatcacctctctccaatttgaaggaagatcatgatgataaaaccaaaaagagaaaaggtcatgatactttgatcattttgat |
292 |
Q |
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| T |
28437380 |
attgattctccatcacctctctccaatttgaaggaagatcacgatgataaaaccaaaaagagaaaaggtcatgatactttgatcattttgat |
28437471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 186
Target Start/End: Original strand, 28487019 - 28487190
Alignment:
| Q |
12 |
gcaaagacaataccagaaaacatttgtttaaattctacatttaacaatggtcaaagtatttgtgggttgaatagcaattgtacccttagagatgaccaaa |
111 |
Q |
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| T |
28487019 |
gcaaagactataccagaaaacatatgtttgtattctacatt---ccgaggtgaaggtgtatgtgggtttaatagtatttgcaccattacaaatgaccaaa |
28487115 |
T |
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| Q |
112 |
ggccaatgtgtacttgtctagaaggatattctctaattgattcaaacaacatgtatggggattgcataccaaatt |
186 |
Q |
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| T |
28487116 |
ggccaaattgtacctgcccagacgaatattcaccgattgattcaaataacatgtatgctggttgcataccaaatt |
28487190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 103 - 186
Target Start/End: Original strand, 28465340 - 28465423
Alignment:
| Q |
103 |
atgaccaaaggccaatgtgtacttgtctagaaggatattctctaattgattcaaacaacatgtatggggattgcataccaaatt |
186 |
Q |
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| T |
28465340 |
atgaccaaaggccaaattgtacctgcccagacgaatattctccgattgattcaaataacatgtatgctggttgcataccaaatt |
28465423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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