View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-tnk81-10 (Length: 283)
Name: R108-tnk81-10
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] R108-tnk81-10 |
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[»] chr3 (23 HSPs) |
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[»] scaffold0083 (1 HSPs) |
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[»] chr8 (2 HSPs) |
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[»] chr4 (1 HSPs) |
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[»] scaffold0002 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 23)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 8 - 283
Target Start/End: Complemental strand, 10582750 - 10582477
Alignment:
Q |
8 |
caagcccatcgatattaattttcttt-actgncgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttctt |
106 |
Q |
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|||||||||| || |||||||| ||| | || ||||||||||||||||||| ||||||||||||||||||||| ||| |||| |||| ||||||||| |
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T |
10582750 |
caagcccatcaatcttaatttttttttattgacgacaaccaatgcaaagtg---ggctctgtttccaatagatgaacacaaccttctatttcaatttctt |
10582654 |
T |
|
Q |
107 |
ctatgcaaggaagatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaattttatgccttcaaa |
206 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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T |
10582653 |
ctatgcaaggaagatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaattgtatgccttcaaa |
10582554 |
T |
|
Q |
207 |
gggaagccattgattccaatttggtatattgtcgaattttatatactcaagggatggaaatggttggaaggaagaat |
283 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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T |
10582553 |
gggaagccatttattccaatttggtatattgtcgaattttatatactcaagggatggaaatggttggaaggaagaat |
10582477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 12 - 282
Target Start/End: Complemental strand, 10197811 - 10197541
Alignment:
Q |
12 |
cccatcgatattaattttctttactgncgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttctatg |
111 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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T |
10197811 |
cccatcgatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacaaccttttattacaatttcttttatg |
10197712 |
T |
|
Q |
112 |
caaggaagatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaattttatgccttcaaagggaa |
211 |
Q |
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|||||||| | |||||||||||||||| |||||| ||||||||||||||| |||||||| |||| |||||||||||||||||||||||||| |||||| |
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T |
10197711 |
caaggaaggttgctaggcaaatgtccccttagttctcgacaattacgtaactccatagctctaagtcgaggaaaagcaaattttatgccttcatagggaa |
10197612 |
T |
|
Q |
212 |
gccattgattccaatttggtatattgtcgaattttatatactcaagggatggaaatggttggaaggaagaa |
282 |
Q |
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|||||| |||||||||||| || ||||||||||||||| |||||||| ||||||||| |||||||||||| |
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T |
10197611 |
gccattcattccaatttggcatgttgtcgaattttatacgctcaagggttggaaatggctggaaggaagaa |
10197541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 10262847 - 10262566
Alignment:
Q |
1 |
cttccatcaagcccatcgatattaattttctttactgncgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaa |
100 |
Q |
|
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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T |
10262847 |
cttccatcaagcccatcgatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacaaccttttattacaa |
10262748 |
T |
|
Q |
101 |
tttcttctatgcaaggaagatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaattttatgcc |
200 |
Q |
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||||||||||||||||||| | ||||||||||||| || |||||| ||||||||| |||||| |||||||| |||| ||||||||| || ||||||||| |
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T |
10262747 |
tttcttctatgcaaggaagtttgctaggcaaatgttcccttagttctggacaattatgtaactccatagctctaagtcgaggaaaagaaagttttatgcc |
10262648 |
T |
|
Q |
201 |
ttcaaagggaagccattgattccaatttggtatattgtcgaattttatatactcaagggatggaaatggttggaaggaagaa |
282 |
Q |
|
|
|||| |||||||||||| |||||||||||| | ||| |||||||||| |||||||||| |||||||||||||||||||| |
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T |
10262647 |
ttcatagggaagccattcattccaatttggcaagctgttgaattttatacgctcaagggattgaaatggttggaaggaagaa |
10262566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 12 - 282
Target Start/End: Complemental strand, 10090929 - 10090658
Alignment:
Q |
12 |
cccatcgatattaattttctttactgncgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttctatg |
111 |
Q |
|
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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|
T |
10090929 |
cccatcgatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacaaccttttattacaatttcttttatg |
10090830 |
T |
|
Q |
112 |
caaggaagatggctaggcaaatgtccctttagtttgggacaattacgt-aacttcatagctcgaagttgaggaaaagcaaattttatgccttcaaaggga |
210 |
Q |
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|||||||| | |||||||||||||||| |||||| ||||||||||| ||| |||||||| |||| |||||||||||||||||||||||||| ||||| |
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T |
10090829 |
caaggaaggttgctaggcaaatgtccccttagttctcgacaattacgtgtactccatagctctaagtcgaggaaaagcaaattttatgccttcataggga |
10090730 |
T |
|
Q |
211 |
agccattgattccaatttggtatattgtcgaattttatatactcaagggatggaaatggttggaaggaagaa |
282 |
Q |
|
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||||||| |||||||||||| || ||||||||||||||| |||||||| ||||||||| |||||||||||| |
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T |
10090729 |
agccattcattccaatttggcatgttgtcgaattttatacgctcaagggttggaaatggctggaaggaagaa |
10090658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 10361724 - 10362003
Alignment:
Q |
1 |
cttccatcaagcccatcgatattaattttctttactgncgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaa |
100 |
Q |
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||||||||||||||||| || |||| || |||| || ||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||| |
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T |
10361724 |
cttccatcaagcccatcaatcttaaaattttttattgacgacaaccaatgcaaagtg---ggctctgtttccaatagatgagaacaaccttgtattacaa |
10361820 |
T |
|
Q |
101 |
tttcttctatgcaaggaagatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaattttatgcc |
200 |
Q |
|
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||||||||||||||||||| | ||| |||||||||||| |||||| ||||||||| |||||| |||||||| |||||||||||||||| |||||||||| |
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|
T |
10361821 |
tttcttctatgcaaggaaggttgctcggcaaatgtccccttagttctggacaattatgtaactccatagctctaagttgaggaaaagcacattttatgcc |
10361920 |
T |
|
Q |
201 |
ttcaaagggaagccattgattccaatttggtatattgtcgaattttatatactcaagggatggaaatggttggaaggaagaat |
283 |
Q |
|
|
||||||||||| ||||| |||||||||||| || |||||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
T |
10361921 |
ttcaaagggaatccattcattccaatttggcatgttgtcgaaatttatgcgctcaagggatggaaatggttggaaggaagaat |
10362003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 10431964 - 10432246
Alignment:
Q |
1 |
cttccatcaagcccatcgatattaattttctttactgncgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaa |
100 |
Q |
|
|
||||| |||||||||| |||||||| |||||||| || |||||||||||||| |||||||||||||||||||| ||| |||||||| ||| ||| ||| |
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|
T |
10431964 |
cttccgtcaagcccattgatattaactttctttattgacgacaaccaatgcatagtgtttggctctgtttccagtagttgagaacaacctgatatatcaa |
10432063 |
T |
|
Q |
101 |
tttcttctatgcaaggaagatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaattttatgcc |
200 |
Q |
|
|
||||||||||||||||||| | ||||||||| |||||| |||||| ||||||||| |||||| |||| ||| |||| |||||||||||| ||||||||| |
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|
T |
10432064 |
tttcttctatgcaaggaaggttgctaggcaattgtccccttagttcaggacaattatgtaactccataactctaagtcgaggaaaagcaacttttatgcc |
10432163 |
T |
|
Q |
201 |
ttcaaagggaagccattgattccaatttggtatattgtcgaattttatatactcaagggatggaaatggttggaaggaagaat |
283 |
Q |
|
|
||||||||| ||||||| |||||||||||| || ||||||||||||||| ||||||||||||||||||| |||||||||||| |
|
|
T |
10432164 |
ttcaaagggcagccattcattccaatttggcatgttgtcgaattttatacgctcaagggatggaaatggtaggaaggaagaat |
10432246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 9 - 282
Target Start/End: Complemental strand, 10665658 - 10665394
Alignment:
Q |
9 |
aagcccatcgatattaattttctttactgncgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttct |
108 |
Q |
|
|
|||||||| ||| |||| ||| |||| || ||||||||||||||||||| || ||||||| |||||| || |||| ||| ||||||||||| |
|
|
T |
10665658 |
aagcccattgattttaactttttttattgacgacaaccaatgcaaagtg---ggacctgtttctaatagacga------ccttcaatttcaatttcttct |
10665568 |
T |
|
Q |
109 |
atgcaaggaagatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaattttatgccttcaaagg |
208 |
Q |
|
|
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||| |||| |||||||||||||||||||||||||||||| |
|
|
T |
10665567 |
atacaaggaagatggctaggcaaatgtccctttagttttggacaattacgtaactccatggctctaagtcgaggaaaagcaaattttatgccttcaaagg |
10665468 |
T |
|
Q |
209 |
gaagccattgattccaatttggtatattgtcgaattttatatactcaagggatggaaatggttggaaggaagaa |
282 |
Q |
|
|
||| ||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
T |
10665467 |
gaatccattcattccaatttggtatgttgtcgaattttatacactcaagggatggaaatggttggaaggaagaa |
10665394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 8 - 283
Target Start/End: Complemental strand, 10519624 - 10519352
Alignment:
Q |
8 |
caagcccatcgatattaattttctttactgncgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttc |
107 |
Q |
|
|
||||||||| |||||| ||||| |||| || ||||||||||||||||| ||| |||||||||||||||| ||| |||||||||||||||||||| |
|
|
T |
10519624 |
caagcccattgatattcattttttttattgaagacaaccaatgcaaagtagatgg---tgtttccaatagatgaacacaaccttttattacaatttcttc |
10519528 |
T |
|
Q |
108 |
tatgcaaggaagatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaattttatgccttcaaag |
207 |
Q |
|
|
|||| ||||||| | | | |||||||||||| |||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||| |
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|
T |
10519527 |
tatggaaggaaggttggtgggcaaatgtccccttagttctggacaattacgtaactttatagccttaagttgaggaaaagcaaattttatgccttcgaag |
10519428 |
T |
|
Q |
208 |
ggaagccattgattccaatttggtatattgtcgaattttatatactcaagggatggaaatggttggaaggaagaat |
283 |
Q |
|
|
|||| ||||| ||||||||| | || |||||||| ||||| |||||||||||| ||||||||||||||||||| |
|
|
T |
10519427 |
ggaatccattcattccaattgagcatgttgtcgaacattatacgctcaagggatgggaatggttggaaggaagaat |
10519352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 283
Target Start/End: Original strand, 11779922 - 11780184
Alignment:
Q |
18 |
gatattaattttctttactgncgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttctatgcaagga |
117 |
Q |
|
|
|||||| |||| |||| || |||||||||||||||||| ||| | ||||||||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
T |
11779922 |
gatattcatttcttttattgacgacaaccaatgcaaagtagatggtt---tttccaatagatgagaacaaccttttattacaatttcttcgatgcaagga |
11780018 |
T |
|
Q |
118 |
agatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaattttatgccttcaaagggaagccatt |
217 |
Q |
|
|
|| | | |||||||||||||| |||||| ||||||||||| |||| ||||| | ||| ||||||| ||||||||||| ||||||||||||| ||||| |
|
|
T |
11780019 |
aggttggtaggcaaatgtccccttagttcaggacaattacgcaactccatagttttgagtcgaggaaatgcaaattttataccttcaaagggaaaccatt |
11780118 |
T |
|
Q |
218 |
gattccaatttggtatattgtcgaattttatatactcaagggatggaaatggttggaaggaagaat |
283 |
Q |
|
|
|||||||||||| || ||||| ||||||||| ||| |||||||||||||||||||||||||||| |
|
|
T |
11780119 |
cattccaatttggcatgttgtcaaattttataagctcgagggatggaaatggttggaaggaagaat |
11780184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 7 - 283
Target Start/End: Original strand, 10373774 - 10374047
Alignment:
Q |
7 |
tcaagcccatcgatattaattttctttactgncgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttctt |
106 |
Q |
|
|
|||||||||| |||||| |||| |||| || ||||||||||||| ||| ||| ||||||||||||||||||||| ||| |||||||||||||| |
|
|
T |
10373774 |
tcaagcccattgatattcatttcttttattgaagacaaccaatgcagagtagatgg---tgtttccaatagatgagaacaacctgatattacaatttctt |
10373870 |
T |
|
Q |
107 |
ctatgcaaggaagatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaattttatgccttcaaa |
206 |
Q |
|
|
||||| ||||||| | | | |||||||||||| |||||| |||||||||||||||| ||||| |||| |||||||||||||||||||||||||||| |
|
|
T |
10373871 |
ctatggaaggaaggttggtgggcaaatgtccccttagttctggacaattacgtaactctatagccttaagtcgaggaaaagcaaattttatgccttcaaa |
10373970 |
T |
|
Q |
207 |
gggaagccattgattccaatttggtatattgtcgaattttatatactcaagggatggaaatggttggaaggaagaat |
283 |
Q |
|
|
||||| ||||| ||||||||| | || |||||||| |||||| |||||||||||| ||||||||||||||||||| |
|
|
T |
10373971 |
gggaatccattcattccaattgagcatgttgtcgaactttatacgctcaagggatgggaatggttggaaggaagaat |
10374047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 11771363 - 11771101
Alignment:
Q |
18 |
gatattaattttctttactgncgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttctatgcaagga |
117 |
Q |
|
|
|||||| |||| |||| || |||||||||||||||||| ||| | ||||||||||||||||||| ||||| |||||||||||||| ||||||||| |
|
|
T |
11771363 |
gatattcatttcttttattgacgacaaccaatgcaaagtagatggtt---tttccaatagatgagaacaacctttgattacaatttcttcgatgcaagga |
11771267 |
T |
|
Q |
118 |
agatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaattttatgccttcaaagggaagccatt |
217 |
Q |
|
|
|| | | |||| |||||| || |||||| ||||||||||| |||| ||||| | ||| ||||||||||||||||||| |||||||| |||||||||| |
|
|
T |
11771266 |
aggttggtaggaaaatgtacccttagttcaggacaattacgcaactccatagttttgagtcgaggaaaagcaaattttataccttcaaaaggaagccatt |
11771167 |
T |
|
Q |
218 |
gattccaatttggtatattgtcgaattttatatactcaagggatggaaatggttggaaggaagaat |
283 |
Q |
|
|
|||||||||||| || ||||| ||||||||| ||| |||||||||||||||||||||||||||| |
|
|
T |
11771166 |
cattccaatttggcatgttgtcaaattttataagctcgagggatggaaatggttggaaggaagaat |
11771101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 8 - 283
Target Start/End: Complemental strand, 9851878 - 9851606
Alignment:
Q |
8 |
caagcccatcgatattaattttctttactgncgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttc |
107 |
Q |
|
|
||||||||| |||||| ||||| |||| || ||||||||| ||| ||| ||| ||||||||||||||||||||| ||| ||||||||||||||| |
|
|
T |
9851878 |
caagcccattgatattcattttttttattgaagacaaccaacgcagagtagatgg---tgtttccaatagatgagaacaacctgatattacaatttcttc |
9851782 |
T |
|
Q |
108 |
tatgcaaggaagatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaattttatgccttcaaag |
207 |
Q |
|
|
|||| ||||||| | | | ||||||| |||| ||||||| ||||||| |||||||| || || |||||||||||||||||||||||||||||||||| |
|
|
T |
9851781 |
tatggaaggaaggttggtgggcaaatatccccttagttttggacaatcacgtaactctattgccttaagttgaggaaaagcaaattttatgccttcaaag |
9851682 |
T |
|
Q |
208 |
ggaagccattgattccaatttggtatattgtcgaattttatatactcaagggatggaaatggttggaaggaagaat |
283 |
Q |
|
|
|||| ||||| ||||||||| | || |||||||| |||||| |||||||||||| ||||||||||||||||||| |
|
|
T |
9851681 |
ggaatccattcattccaattgagcatgttgtcgaactttatacgctcaagggatgggaatggttggaaggaagaat |
9851606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 8 - 283
Target Start/End: Complemental strand, 10129064 - 10128792
Alignment:
Q |
8 |
caagcccatcgatattaattttctttactgncgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttc |
107 |
Q |
|
|
||||||||| |||||| ||||| |||| || ||||||||||||| ||| ||| ||||||||||||||||||||| ||| ||||||||||||||| |
|
|
T |
10129064 |
caagcccattgatattcattttttttattgaagacaaccaatgcagagtagatgg---tgtttccaatagatgagaacaacctgatattacaatttcttc |
10128968 |
T |
|
Q |
108 |
tatgcaaggaagatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaattttatgccttcaaag |
207 |
Q |
|
|
|||| ||||||| | | | |||||||||||| |||||| |||||||| | ||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
T |
10128967 |
tatggaaggaaggttggtgggcaaatgtccccttagttctggacaattccataactctatagccttaagttgaggaaaagcaaattttatgccttcaaag |
10128868 |
T |
|
Q |
208 |
ggaagccattgattccaatttggtatattgtcgaattttatatactcaagggatggaaatggttggaaggaagaat |
283 |
Q |
|
|
|||| ||||| ||||||||| || |||||||| ||||||| |||||||||| | ||||||||||||||||||| |
|
|
T |
10128867 |
ggaatccattcattccaattgaccatgttgtcgaactttatatgctcaagggatcggaatggttggaaggaagaat |
10128792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 8 - 281
Target Start/End: Complemental strand, 10079549 - 10079279
Alignment:
Q |
8 |
caagcccatcgatattaattttctttactgncgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttc |
107 |
Q |
|
|
|||| |||| |||||||||||| ||||||| || |||||||| |||||| ||| |||||||||||||| | ||| |||||||| | ||||||||| |
|
|
T |
10079549 |
caagaccattgatattaattttttttactgacggcaaccaatccaaagtaggtgg---tgtttccaatagattcgcacaaccttttatcataatttcttc |
10079453 |
T |
|
Q |
108 |
tatgcaaggaagatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaattttatgccttcaaag |
207 |
Q |
|
|
|||||||||||| | |||||| ||||| |||||||||| ||||||| | ||||| ||||| || |||| |||||||| |||| ||||| ||||||||| |
|
|
T |
10079452 |
tatgcaaggaaggtcgctaggaaaatgcccctttagttcaggacaatcatctaactccatagttctaagtcgaggaaaaacaaaatttattccttcaaag |
10079353 |
T |
|
Q |
208 |
ggaagccattgattccaatttggtatattgtcgaattttatatactcaagggatggaaatggttggaaggaaga |
281 |
Q |
|
|
||||||||||||||||||||||| || |||| |||||||| ||||||||||||||||||||||||| |||| |
|
|
T |
10079352 |
ggaagccattgattccaatttggcatgttgttaaattttatgcgctcaagggatggaaatggttggaagaaaga |
10079279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 8 - 281
Target Start/End: Complemental strand, 10186519 - 10186249
Alignment:
Q |
8 |
caagcccatcgatattaattttctttactgncgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttc |
107 |
Q |
|
|
|||| |||| |||||||||||| ||||||| || |||||||| |||||| ||| ||| |||||||||| | ||| |||||||| | ||||||||| |
|
|
T |
10186519 |
caagaccattgatattaattttttttactgacggcaaccaatccaaagtaggtgg---tgtatccaatagattcgcacaaccttttatcataatttcttc |
10186423 |
T |
|
Q |
108 |
tatgcaaggaagatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaattttatgccttcaaag |
207 |
Q |
|
|
|||||||||||| | ||||||||||| |||||||||| ||||||| | ||||| ||||| || |||| |||||||| |||| ||||| ||||||||| |
|
|
T |
10186422 |
tatgcaaggaaggtcactaggcaaatgcccctttagttcaggacaatcatctaactccatagttctaagtcgaggaaaaacaaaatttattccttcaaag |
10186323 |
T |
|
Q |
208 |
ggaagccattgattccaatttggtatattgtcgaattttatatactcaagggatggaaatggttggaaggaaga |
281 |
Q |
|
|
||||||||||||||||||||||| || |||| |||||||| ||||||||||||||||||||||||| |||| |
|
|
T |
10186322 |
ggaagccattgattccaatttggcatgttgttaaattttatgcgctcaagggatggaaatggttggaagaaaga |
10186249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 8 - 283
Target Start/End: Complemental strand, 9840997 - 9840728
Alignment:
Q |
8 |
caagcccatcgatattaattttctttactgncgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttc |
107 |
Q |
|
|
||||||||| |||||| ||||| |||| || ||||||||||||| ||| ||| ||||||||||||||||||||| ||| ||||||||||| ||| |
|
|
T |
9840997 |
caagcccattgatattcattttttttattgaagacaaccaatgcagagtagatgg---tgtttccaatagatgagaacaacctgatattacaattttttc |
9840901 |
T |
|
Q |
108 |
tatgcaaggaagatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaattttatgccttcaaag |
207 |
Q |
|
|
|||| ||||||| | | | ||||||| |||| |||||| |||||||| ||||||| ||||| |||||||||||||||| ||||||||||||||| |
|
|
T |
9840900 |
tatggaaggaaggttggtgggcaaatatccccttagttctggacaattgcgtaactctatagccttaagttgaggaaaagca---tttatgccttcaaag |
9840804 |
T |
|
Q |
208 |
ggaagccattgattccaatttggtatattgtcgaattttatatactcaagggatggaaatggttggaaggaagaat |
283 |
Q |
|
|
|||| ||||| ||||||||| | || |||||||| |||||| |||||||||||| ||||||||||||||||||| |
|
|
T |
9840803 |
ggaatccattcattccaattgagcatgttgtcgaactttatacgctcaagggatgggaatggttggaaggaagaat |
9840728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 7 - 283
Target Start/End: Complemental strand, 10034140 - 10033867
Alignment:
Q |
7 |
tcaagcccatcgatattaattttctttactgncgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttctt |
106 |
Q |
|
|
|||||||||| |||||| ||||| |||| || ||||||||||||| ||| ||| ||||||||||||||||||||| ||| ||||||||||| || |
|
|
T |
10034140 |
tcaagcccattgatattcattttttttattgaagacaaccaatgcagagtagatgg---tgtttccaatagatgagaacaacctgatattacaatttttt |
10034044 |
T |
|
Q |
107 |
ctatgcaaggaagatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaattttatgccttcaaa |
206 |
Q |
|
|
||||| ||||||| | | | |||||||||||| |||||| ||||||||| ||||| ||||| |||| ||||||||||| |||||||||||||||| |
|
|
T |
10034043 |
ctatggaaggaaggttggtgggcaaatgtccccttagttctggacaattatataactctatagccttaagtcgaggaaaagcacattttatgccttcaaa |
10033944 |
T |
|
Q |
207 |
gggaagccattgattccaatttggtatattgtcgaattttatatactcaagggatggaaatggttggaaggaagaat |
283 |
Q |
|
|
||||| ||||| ||||||||| || |||||||| |||||| |||||||||| | ||||||||||||||||||| |
|
|
T |
10033943 |
gggaatccattcattccaattgaccatgttgtcgaactttatacgctcaagggatcggaatggttggaaggaagaat |
10033867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 283
Target Start/End: Complemental strand, 10502722 - 10502450
Alignment:
Q |
8 |
caagcccatcgatattaattttctttactgncgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttc |
107 |
Q |
|
|
||||||||| ||||||| ||| || | || ||||| |||||||||||| ||| ||||||||||||||||| ||| |||| ||||||||||||||| |
|
|
T |
10502722 |
caagcccattgatattaccttttttcaatgacgacagccaatgcaaagta---ggcggtgtttccaatagatgagcacaaccttctattacaatttcttc |
10502626 |
T |
|
Q |
108 |
tatgcaaggaagatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaattttatgccttcaaag |
207 |
Q |
|
|
|||| ||| ||| |||| ||| |||| ||| | | || | ||||||| ||| ||||| | | ||| ||||||| ||||| || | ||||||||| |
|
|
T |
10502625 |
tatgaaagaaaggtggcaaggtaaattccccctcaattcagaacaattaagtatcttcagaattttaagacgaggaaaggcaaaattgtttccttcaaag |
10502526 |
T |
|
Q |
208 |
ggaagccattgattccaatttggtatattgtcgaattttatatactcaagggatggaaatggttggaaggaagaat |
283 |
Q |
|
|
| |||||||| ||||||||||| || ||| ||| ||||| |||||||||| |||||||||||||||||||||| |
|
|
T |
10502525 |
gaaagccattccttccaatttggcatgttgaaaaatgttatacactcaagggagggaaatggttggaaggaagaat |
10502450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 283
Target Start/End: Complemental strand, 10679389 - 10679305
Alignment:
Q |
199 |
ccttcaaagggaagccattgattccaatttggtatattgtcgaattttatatactcaagggatggaaatggttggaaggaagaat |
283 |
Q |
|
|
|||||||| || ||||||| |||||||||||| || | | ||| ||||| |||||||||| |||||||||||||||||||||| |
|
|
T |
10679389 |
ccttcaaaagggagccattcattccaatttggcatgatttgaaatcttatacactcaagggacggaaatggttggaaggaagaat |
10679305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 283
Target Start/End: Complemental strand, 10530731 - 10530514
Alignment:
Q |
66 |
tgtttccaatagatgagaacacccttttattacaatttcttctatgcaaggaagatggctaggcaaatgtccctttagtttgggacaattacgtaacttc |
165 |
Q |
|
|
||||||||||||| ||| ||| |||| |||| ||||||||||||| ||| || |||||||| ||||||||| | | || ||||||||| ||||| |
|
|
T |
10530731 |
tgtttccaatagacgagcacaaccttctatttgaatttcttctatggaagataggtggctaggaaaatgtcccctaaattctggacaattatataactca |
10530632 |
T |
|
Q |
166 |
atagctcgaagttgaggaaaagcaaattttatgccttcaaagggaagccattgattccaatttggtatattgtcgaattttatatactcaagggatggaa |
265 |
Q |
|
|
| || | ||| ||||||||||| | | |||||||| || ||||||| |||||||||||| || | | ||| ||||| ||||||||| |||| |
|
|
T |
10530631 |
agagttttaagacatggaaaagcaaagctgtttccttcaaaagggagccattcattccaatttggcatgatttgaaatcttatacgctcaagggacggaa |
10530532 |
T |
|
Q |
266 |
atggttggaaggaagaat |
283 |
Q |
|
|
|||||||||||||||||| |
|
|
T |
10530531 |
atggttggaaggaagaat |
10530514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 138
Target Start/End: Original strand, 11129020 - 11129089
Alignment:
Q |
69 |
ttccaatagatgagaacacccttttattacaatttcttctatgcaaggaagatggctaggcaaatgtccc |
138 |
Q |
|
|
|||||| ||||||| ||| ||||| |||||| |||||||||| ||| |||||||||||||||| |||| |
|
|
T |
11129020 |
ttccaacagatgaggacaacctttatttacaaattcttctatggaagagagatggctaggcaaatttccc |
11129089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 13163027 - 13162975
Alignment:
Q |
100 |
atttcttctatgcaaggaagatggctaggcaaatgtccctttagtttgggaca |
152 |
Q |
|
|
||||| ||||| |||||||| |||||||||||||||||||||||| ||||| |
|
|
T |
13163027 |
atttcatctattgaaggaagactgctaggcaaatgtccctttagtttaggaca |
13162975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 13334951 - 13334899
Alignment:
Q |
100 |
atttcttctatgcaaggaagatggctaggcaaatgtccctttagtttgggaca |
152 |
Q |
|
|
||||| ||||| |||||||| |||||||||||||||||||||||| ||||| |
|
|
T |
13334951 |
atttcgtctattgaaggaagactgctaggcaaatgtccctttagtttaggaca |
13334899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 8 - 279
Target Start/End: Complemental strand, 26909027 - 26908759
Alignment:
Q |
8 |
caagcccatcgatattaattttctttactgncgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttc |
107 |
Q |
|
|
||||||||| ||||||||||||| || | ||||| |||||| ||||| ||| |||||||||||||||| | || |||||||||||||||||||| |
|
|
T |
26909027 |
caagcccatggatattaattttcggtatggacgacacccaatgtaaagtagatgg---tgtttccaatagatgatagcaaccttttattacaatttcttc |
26908931 |
T |
|
Q |
108 |
tatgcaaggaagatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaattttatgccttcaaag |
207 |
Q |
|
|
|||||||||||| | |||||||||| |||| |||||||| ||||||||| | |||| |||| || ||| ||||||||| ||| || || ||||||||| |
|
|
T |
26908930 |
tatgcaaggaaggttgctaggcaaaagtccttttagttttggacaattatgcaactcaatagttctgagtcgaggaaaagaaaaattcattccttcaaag |
26908831 |
T |
|
Q |
208 |
ggaagccattgattccaatttggtatattgtcgaattttatatactcaagggatggaaatggttggaaggaa |
279 |
Q |
|
|
||||||||||||||||||||||| || |||| ||||||||| |||||||||| ||||||||||||||||| |
|
|
T |
26908830 |
ggaagccattgattccaatttggcatgttgttaaattttatacgctcaagggattgaaatggttggaaggaa |
26908759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 8 - 283
Target Start/End: Original strand, 55532 - 55804
Alignment:
Q |
8 |
caagcccatcgatattaattttctttactgncgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttc |
107 |
Q |
|
|
||||||||| |||||| ||| | |||| || ||||||||||||| ||| ||| ||||||||||||||||||||| ||| ||||||||||||||| |
|
|
T |
55532 |
caagcccattgatattcattatttttattgaagacaaccaatgcagagtagatgg---tgtttccaatagatgagaacaacctgatattacaatttcttc |
55628 |
T |
|
Q |
108 |
tatgcaaggaagatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaattttatgccttcaaag |
207 |
Q |
|
|
|||| ||||||| | | | |||||||||||| |||||| ||||||| |||||||| || || |||||||||||||||||||||||||||||||||| |
|
|
T |
55629 |
tatggaaggaaggttggtgggcaaatgtccccttagttctggacaatcacgtaactctattgccttaagttgaggaaaagcaaattttatgccttcaaag |
55728 |
T |
|
Q |
208 |
ggaagccattgattccaatttggtatattgtcgaattttatatactcaagggatggaaatggttggaaggaagaat |
283 |
Q |
|
|
|||| ||||| ||||||||| || |||||||| |||||| ||||||||||| | ||||||||||||||||||| |
|
|
T |
55729 |
ggaatccattcattccaattgaacatgttgtcgaactttataaactcaagggataggaatggttggaaggaagaat |
55804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 11487164 - 11486902
Alignment:
Q |
18 |
gatattaattttctttactgncgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttctatgcaagga |
117 |
Q |
|
|
||||| |||||| |||| || ||||||||||||||||| ||| ||||||||| ||||| | ||| ||| |||| ||||| ||||||||||||| |
|
|
T |
11487164 |
gatatcaattttttttattgacgacaaccaatgcaaagcagatgg---tgtttccaaaagatgggcacaacctgttatattaattttttctatgcaagga |
11487068 |
T |
|
Q |
118 |
agatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaattttatgccttcaaagggaagccatt |
217 |
Q |
|
|
|| |||||||||||||||||| |||| | ||||| || |||||| | || || ||| ||||||||| ||| | |||||||||| |||||||||| |
|
|
T |
11487067 |
aggtggctaggcaaatgtccccttagctcatgacaactatgtaactcaagagttctaagacgaggaaaagaaaaaaatttgccttcaaaaggaagccatt |
11486968 |
T |
|
Q |
218 |
gattccaatttggtatattgtcgaattttatatactcaagggatggaaatggttggaaggaagaat |
283 |
Q |
|
|
||||||||| | || ||| | ||| ||||| | |||||||||| |||||||||||||||||||| |
|
|
T |
11486967 |
ccttccaattttgcatgttgacaaatgttatacattcaagggatgaaaatggttggaaggaagaat |
11486902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 66 - 283
Target Start/End: Original strand, 44955662 - 44955879
Alignment:
Q |
66 |
tgtttccaatagatgagaacacccttttattacaatttcttctatgcaaggaagatggctaggcaaatgtccctttagtttgggacaattacgtaacttc |
165 |
Q |
|
|
||||||||||||||||| ||| |||||||| |||||||||||||| ||| |||||| || ||||| |||| | | |||| ||||||| | ||||| || |
|
|
T |
44955662 |
tgtttccaatagatgagcacaatcttttatttcaatttcttctatggaagaaagatgacttggcaagtgtcgcctatgttttggacaatcatgtaacgtc |
44955761 |
T |
|
Q |
166 |
atagctcgaagttgaggaaaagcaaattttatgccttcaaagggaagccattgattccaatttggtatattgtcgaattttatatactcaagggatggaa |
265 |
Q |
|
|
| | || ||| ||||||||||||| || | |||| |||||||| ||| | |||||||||| || |||| | ||| |||| ||||||||| || | |
|
|
T |
44955762 |
aaaattctaagacgaggaaaagcaaaattgcttcctttaaagggaatccactccttccaatttgacattttgtgaagtttgatatgctcaagggacggga |
44955861 |
T |
|
Q |
266 |
atggttggaaggaagaat |
283 |
Q |
|
|
||||||||||||| |||| |
|
|
T |
44955862 |
atggttggaaggaggaat |
44955879 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 283
Target Start/End: Original strand, 17851024 - 17851128
Alignment:
Q |
179 |
gaggaaaagcaaattttatgccttcaaagggaagccattgattccaatttggtatattgtcgaattttatatactcaagggatggaaatggttggaagga |
278 |
Q |
|
|
||||||||||||| || |||||| ||||||||||||||| ||||||||||| || ||| || ||| | |||||||||| ||||||||||| ||||| |
|
|
T |
17851024 |
gaggaaaagcaaaattgatgcctacaaagggaagccattccttccaatttggcatgttgcgaaacattaaacactcaagggacggaaatggttgaaagga |
17851123 |
T |
|
Q |
279 |
agaat |
283 |
Q |
|
|
||||| |
|
|
T |
17851124 |
agaat |
17851128 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 145
Target Start/End: Complemental strand, 827942 - 827895
Alignment:
Q |
98 |
caatttcttctatgcaaggaagatggctaggcaaatgtccctttagtt |
145 |
Q |
|
|
||||||| |||||| |||||||||||||||||||||||||||| |||| |
|
|
T |
827942 |
caatttcctctatggaaggaagatggctaggcaaatgtcccttcagtt |
827895 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 152
Target Start/End: Original strand, 143961 - 144013
Alignment:
Q |
100 |
atttcttctatgcaaggaagatggctaggcaaatgtccctttagtttgggaca |
152 |
Q |
|
|
||||| ||||| |||||||| |||||||||||||||||||||||| ||||| |
|
|
T |
143961 |
atttcatctattgaaggaagactgctaggcaaatgtccctttagtttaggaca |
144013 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 152
Target Start/End: Original strand, 152266 - 152318
Alignment:
Q |
100 |
atttcttctatgcaaggaagatggctaggcaaatgtccctttagtttgggaca |
152 |
Q |
|
|
||||| ||||| |||||||| |||||||||||||||||||||||| ||||| |
|
|
T |
152266 |
atttcatctattgaaggaagactgctaggcaaatgtccctttagtttaggaca |
152318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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