View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-tnk81-8 (Length: 936)
Name: R108-tnk81-8
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk81-8 |
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Alignment Details
Target: chr8 (Bit Score: 490; Significance: 0; HSPs: 12)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 408 - 905
Target Start/End: Original strand, 8706565 - 8707062
Alignment:
| Q |
408 |
tattaaagtgtgtatctcttattagtgaaccatccattgctgtgacatcattttagcaatgcttggtgattttcttttatagattgtgaaaaagtacatg |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8706565 |
tattaaagtgtgtatctcttattagtgaaccatccattgctgtgacatcattttagcaatgcttggtgattttcttttatagattgtgaaaaagtacatg |
8706664 |
T |
|
| Q |
508 |
gatgaaatgaaatatctaggttgagttagttttgatgtttttctttaatagactcagaagtactcttttctttatactttgacgtggctgttattctctt |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
8706665 |
gatgaaatgaaatatctaggttgagttagttttgatgtttttctttaatagactcagaagtactcttttctttatactttgatgtggctgttattctctt |
8706764 |
T |
|
| Q |
608 |
ccttttgaaatgctatagattgaactttcataatgtttattttcttctacaattttacagtgtggcgatattcttgatacttcaacggcatttcttgaac |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8706765 |
ccttttgaaatgctatagattgaactttcataatgtttattttcttctacaattttacagtgtggcgatattcttgatacttcaacggcatttcttgaac |
8706864 |
T |
|
| Q |
708 |
atcctagttcaggcgaatactgtgcatcaaaattgttgaaatcaacacatggtaatgttcatggaagcacctgttttcaatctttaaagaacggtgaaat |
807 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8706865 |
atcctagttcaggcgaatactgtgcatcaaaattgttgaaatcaacacatggtaatgttcatggaagcacctgttttcaatctttaaagaacggtgaaat |
8706964 |
T |
|
| Q |
808 |
tgaagacaacaacgagagtacctttcaagattattttgggggattagaggcatcctcttgtgattcaactacagatatacctttggagatgatcaatt |
905 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
8706965 |
tgaagacaacaacgagagtacctttcaagattattttgggggattagaggcatcctcttgtgattcaactgcagatatacctttggagatgatcaatt |
8707062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 9 - 407
Target Start/End: Original strand, 8706133 - 8706530
Alignment:
| Q |
9 |
atagaaattttgagaacaaagttttggatttaaacctttctacatgagacatgctgagaacttatatatgttttataggtgagtgaaactttgccagaaa |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
8706133 |
atagaaattttgagaacaaagttttggatttaagcctttctacatgaaacatgctgagaacttatatttgttttataggtgagtgaaactttgccagaaa |
8706232 |
T |
|
| Q |
109 |
taaatatggaatcaatatttcaggcacaggaagaaaatttatttcctttctcaccacaacagtcttcaatctctgaaaatgagcaggaagtatcaatccc |
208 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8706233 |
taaatatggaatcaatatttcaggcacaggaagaaaatttctttcctttctcaccacaacagtcttcaatctctgaaaatgagcaggaagtatcaatccc |
8706332 |
T |
|
| Q |
209 |
aaactcacgacttcacgatgcctattttagaaatgacaacatcattgttcagagtccatttaaaactattgaagaggaagataagttcatcagttcaatg |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8706333 |
aaactcacgacttcacgatgcctattttagaaatgacaacatcattgttcagagtccatttaaaactattgaagaggaagataagttcatcagttcaatg |
8706432 |
T |
|
| Q |
309 |
attattgacggggatttggacagcggtcatgtccagtccgagtcgttgaaaatggtctactatggaagcagtgacacagatgctgaagtaagtctctac |
407 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
8706433 |
attattgacggggatttggacagcggtcatgtccagtccgagtcgttgaaaatggtctactatggaagcagtgacacagatgctgaagt-agtctctac |
8706530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 546 - 736
Target Start/End: Original strand, 8691930 - 8692121
Alignment:
| Q |
546 |
ttttctttaatagactcagaagtactcttttctttatactttgacgtggctgttattctcttccttttgaaatgcta-tagattgaactttcataatgtt |
644 |
Q |
| |
|
|||||||| ||| | |||||||| || ||||||| ||||| ||| || |||||| |||||||||||||||||||||| |||| || | ||||||| |||| |
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| T |
8691930 |
ttttctttgatacattcagaagttcttttttcttcatactgtgatgtagctgtttttctcttccttttgaaatgctactagaatggaatttcatattgtt |
8692029 |
T |
|
| Q |
645 |
tattttcttctacaattttacagtgtggcgatattcttgatacttcaacggcatttcttgaacatcctagttcaggcgaatactgtgcatca |
736 |
Q |
| |
|
|||||||||||| ||||||||||||| || || |||| |||||||||||||| |||||||| |||||||| ||| ||||||||| ||||||| |
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| T |
8692030 |
tattttcttctaaaattttacagtgtcgcaatgttctggatacttcaacggcgtttcttgagcatcctagctcaagcgaatactatgcatca |
8692121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 658 - 736
Target Start/End: Complemental strand, 14384711 - 14384633
Alignment:
| Q |
658 |
aattttacagtgtggcgatattcttgatacttcaacggcatttcttgaacatcctagttcaggcgaatactgtgcatca |
736 |
Q |
| |
|
||||||||||| |||| || |||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
14384711 |
aattttacagtatggcaatgttctggatacttcaacggcttttcttgaacatcctagttcaggcgaatactatgcatca |
14384633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 338 - 395
Target Start/End: Original strand, 8691850 - 8691907
Alignment:
| Q |
338 |
tgtccagtccgagtcgttgaaaatggtctactatggaagcagtgacacagatgctgaa |
395 |
Q |
| |
|
|||||||||| ||||||||| |||| || ||||||||||||||||||||||||||||| |
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| T |
8691850 |
tgtccagtccaagtcgttgagaatgatcgactatggaagcagtgacacagatgctgaa |
8691907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 165 - 316
Target Start/End: Original strand, 8744915 - 8745066
Alignment:
| Q |
165 |
caacagtcttcaatctctgaaaatgagcaggaagtatcaatcccaaactcacgacttcacgatgcctattttagaaatgacaacatcattgttcagagtc |
264 |
Q |
| |
|
||||| |||||||||| ||||||||||| |||||||| || ||||||||| | |||| | | |||||||||||||| |||| || ||||||||| |
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|
| T |
8744915 |
caacaatcttcaatctatgaaaatgagcgggaagtatatttctcaaactcacaatttcaaggagattattttagaaatgaagacatggttattcagagtc |
8745014 |
T |
|
| Q |
265 |
catttaaaactattgaagaggaagataagttcatcagttcaatgattattga |
316 |
Q |
| |
|
| ||| |||| | |||||||||| |||| ||||| | |||||||||| |||| |
|
|
| T |
8745015 |
cctttgaaaccaatgaagaggaaaataacttcattaattcaatgattgttga |
8745066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 8724900 - 8724978
Alignment:
| Q |
7 |
tgatagaaattttgagaacaaagttttggatttaaacctttctacatgagacatgctgagaacttatatatgttttata |
85 |
Q |
| |
|
||||||||||||| | | | |||| |||| |||| ||||||| |||||| |||||||||||||||||| ||||||||| |
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|
| T |
8724900 |
tgatagaaattttcaaagccaagtcttggttttacacctttccacatgaaacatgctgagaacttatacttgttttata |
8724978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 840 - 905
Target Start/End: Original strand, 8692132 - 8692197
Alignment:
| Q |
840 |
attttgggggattagaggcatcctcttgtgattcaactacagatatacctttggagatgatcaatt |
905 |
Q |
| |
|
|||| |||||||| ||||||||||||||||| ||| || |||||| |||| | ||||||||||||| |
|
|
| T |
8692132 |
atttcgggggattggaggcatcctcttgtgactcatctgcagataaacctctagagatgatcaatt |
8692197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 83
Target Start/End: Original strand, 8744741 - 8744817
Alignment:
| Q |
7 |
tgatagaaattttgagaacaaagttttggatttaaacctttctacatgagacatgctgagaacttatatatgtttta |
83 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||| || || |||||| ||||||| |||||||||| ||||||| |
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|
| T |
8744741 |
tgatagaaattttgaaaacaaagttttggctttacacaatttcacatgaaacatgctaagaacttatacttgtttta |
8744817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 830 - 889
Target Start/End: Complemental strand, 14384632 - 14384573
Alignment:
| Q |
830 |
tttcaagattattttgggggattagaggcatcctcttgtgattcaactacagatatacct |
889 |
Q |
| |
|
|||| |||| |||| |||||||| ||||||||||||||||| |||||| |||||| |||| |
|
|
| T |
14384632 |
tttcgagatgatttcgggggattggaggcatcctcttgtgactcaactgcagataaacct |
14384573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 902 - 936
Target Start/End: Original strand, 8706096 - 8706130
Alignment:
| Q |
902 |
aattcctgatgtaaggagttcatccttggtaaatg |
936 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |
|
|
| T |
8706096 |
aattcctgatgtaaggagttcatccttgataaatg |
8706130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 202
Target Start/End: Original strand, 8691629 - 8691690
Alignment:
| Q |
141 |
gaaaatttatttcctttctcaccacaacagtcttcaatctctgaaaatgagcaggaagtatc |
202 |
Q |
| |
|
||||||| |||||||||||| || | ||| |||||||||||||||||||| | |||||||| |
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|
| T |
8691629 |
gaaaattactttcctttctcaacataccagccttcaatctctgaaaatgagaacgaagtatc |
8691690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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