View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-tnk89-1 (Length: 142)
Name: R108-tnk89-1
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk89-1 |
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| [»] chr4 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 109; Significance: 3e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 3e-55
Query Start/End: Original strand, 9 - 142
Target Start/End: Complemental strand, 39221834 - 39221699
Alignment:
| Q |
9 |
tcttgagaaagctctttcccaattttgctccccaacttctcaagttattcgatgaaatcaatcatcttaagcacatggggtccaacttgatcattttcac |
108 |
Q |
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| T |
39221834 |
tcttgagaaagctctttcccaatattgcaccccaacttctcaagttgttcgatgagatcaatcatcttaagcacatggggtccaacttgatcattttcac |
39221735 |
T |
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| Q |
109 |
tcaatgaggacctgaac--agttttagacaactgat |
142 |
Q |
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| T |
39221734 |
tcaatgaggacctgaacagagttttagacaactgat |
39221699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 107; Significance: 5e-54; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 5e-54
Query Start/End: Original strand, 7 - 142
Target Start/End: Original strand, 5916207 - 5916344
Alignment:
| Q |
7 |
agtcttgagaaagctctttcccaattttgctccccaacttctcaagttattcgatgaaatcaatcatcttaagcacatggggtccaacttgatcattttc |
106 |
Q |
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| T |
5916207 |
agtcttgagaaagctctttcccaatattgcaccccaacttctcaagttgttcgatgagatcaatcatcttaagcacatggggtccaacttgatcattttc |
5916306 |
T |
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| Q |
107 |
actcaatgaggacctgaac--agttttagacaactgat |
142 |
Q |
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| T |
5916307 |
actcaatgaggacctgaacagagttttagacaattgat |
5916344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 107; Significance: 5e-54; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 5e-54
Query Start/End: Original strand, 7 - 142
Target Start/End: Complemental strand, 19419755 - 19419618
Alignment:
| Q |
7 |
agtcttgagaaagctctttcccaattttgctccccaacttctcaagttattcgatgaaatcaatcatcttaagcacatggggtccaacttgatcattttc |
106 |
Q |
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||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||| |
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| T |
19419755 |
agtcttgagaaagctctttcccaatattgcaccccaacttctcaagttgttcgatgagatcaatcatcttaagcacatggggaccaacttgatcattttc |
19419656 |
T |
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| Q |
107 |
actcaatgaggacctgaac--agttttagacaactgat |
142 |
Q |
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| T |
19419655 |
actcaatgaggacctgaacagagttttagacaactgat |
19419618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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